CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, Brno 625 00, Czech Republic.
National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic.
J Phys Chem B. 2024 Sep 5;128(35):8469-8476. doi: 10.1021/acs.jpcb.4c04338. Epub 2024 Aug 28.
Despite ongoing research on antimicrobial peptides (AMPs) and cell-penetrating peptides (CPPs), their precise translocation mechanism remains elusive. This includes Buforin 2 (BF2), a well-known AMP, for which spontaneous translocation across the membrane has been proposed but a high barrier has been calculated. Here, we used computer simulations to investigate the effect of a nonequilibrium situation where the peptides are adsorbed on one side of the lipid bilayer, mimicking experimental conditions. We demonstrated that the asymmetric membrane adsorption of BF2 enhances its translocation across the lipid bilayer by lowering the energy barrier by tens of kJ mol. We showed that asymmetric membrane adsorption also reduced the free energy barrier of lipid flip-flop but remained unlikely even at BF2 surface saturation. These results provide insight into the driving forces behind membrane translocation of cell-penetrating peptides in nonequilibrium conditions, mimicking experiments.
尽管对抗菌肽 (AMPs) 和细胞穿透肽 (CPPs) 的研究一直在进行,但它们的确切转运机制仍难以捉摸。这包括 Buforin 2 (BF2),这是一种众所周知的 AMP,据推测它可以自发穿过细胞膜,但计算出的屏障很高。在这里,我们使用计算机模拟研究了在肽吸附在脂质双层的一侧的非平衡情况下的效果,模拟了实验条件。我们证明,BF2 的不对称膜吸附通过将能量屏障降低数十 kJ mol 来增强其穿过脂质双层的转运。我们表明,不对称膜吸附也降低了脂质翻转的自由能屏障,但即使在 BF2 表面饱和的情况下,这种情况也不太可能发生。这些结果为模拟实验中非平衡条件下细胞穿透肽的膜转运背后的驱动力提供了深入了解。