DSM 14810（JK 615）和DSM 3071（D1）的基因组序列草图
Draft genome sequences of DSM 14810 (JK 615) and DSM 3071 (D1).
作者信息
Berner Keely, Zoza-Veloz Michelle, Nolan Matt, Graham Danielle, Ivanova Natalia, Seshadri Rekha, Spring Stefan, Escobar Matthew
机构信息
Department of Biological Sciences, California State University San Marcos, San Marcos, California, USA.
Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0051724. doi: 10.1128/mra.00517-24. Epub 2024 Aug 28.
Abstract
Here, we report the draft genome sequences of two -type strains isolated from rumen fluid. The genome sequence of DSM 14810 was 3.3 Mb with 3,093 predicted genes, while the DSM 3071 genome sequence was 4.8 Mb with 4,132 predicted genes.
摘要
在此，我们报告了从瘤胃液中分离出的两株模式菌株的基因组序列草图。DSM 14810的基因组序列为3.3 Mb，预测基因有3093个，而DSM 3071的基因组序列为4.8 Mb，预测基因有4132个。
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本文引用的文献
1
InterPro in 2022.InterPro 在 2022 年。
Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. doi: 10.1093/nar/gkac993.
2
Pfam: The protein families database in 2021.Pfam：2021 年的蛋白质家族数据库。
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. doi: 10.1093/nar/gkaa913.
3
The complete genome sequence of the rumen bacterium MB2003.瘤胃细菌MB2003的全基因组序列。
Stand Genomic Sci. 2017 Dec 4;12:72. doi: 10.1186/s40793-017-0285-8. eCollection 2017.
4
High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.从聚球藻培养物中分离出的热带纤细单胞菌CL-CB462(T)（DSM 19535(T)）的高质量基因组草图序列。
Stand Genomic Sci. 2015 Nov 11;10:98. doi: 10.1186/s40793-015-0088-8. eCollection 2015.
5
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.美国国立生物技术信息中心的参考序列（RefSeq）数据库：当前状态、分类扩展及功能注释。
Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8.
6
Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project.模式菌株基因组百科全书，第一阶段：千种微生物基因组（KMG-I）计划。
Stand Genomic Sci. 2013 Dec 17;9(3):1278-84. doi: 10.4056/sigs.5068949. eCollection 2014 Jun 15.
7
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.利用大规模平行测序数据生成高质量的哺乳动物基因组草图组装。
Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8. doi: 10.1073/pnas.1017351108. Epub 2010 Dec 27.
8
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.GenePRIMP：原核基因组的基因预测改进流程。
Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.
9
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
10
The Sequence Alignment/Map format and SAMtools.序列比对/映射格式和 SAMtools。
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
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