Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, People's Republic of China.
College of Food Science and Engineering, Ningbo University, Ningbo 315211, People's Republic of China.
Acta Crystallogr F Struct Biol Commun. 2024 Sep 1;80(Pt 9):228-233. doi: 10.1107/S2053230X24007970. Epub 2024 Aug 28.
The immunoglobulin (Ig)-like domain is found in a broad range of proteins with diverse functional roles. While an essential β-sandwich fold is maintained, considerable structural variations exist and are critical for functional diversity. The Rib-domain family, primarily found as tandem-repeat modules in the surface proteins of Gram-positive bacteria, represents another significant structural variant of the Ig-like fold. However, limited structural and functional exploration of this family has been conducted, which significantly restricts the understanding of its evolution and significance within the Ig superclass. In this work, a high-resolution crystal structure of a Rib domain derived from the probiotic bacterium Limosilactobacillus reuteri is presented. This protein, while sharing significant structural similarity with homologous domains from other bacteria, exhibits a significantly increased thermal resistance. The potential structural features contributing to this stability are discussed. Moreover, the presence of two copper-binding sites, with one positioned on the interface, suggests potential functional roles that warrant further investigation.
免疫球蛋白 (Ig) 样结构域存在于具有多种功能作用的广泛蛋白质中。尽管维持了必需的β-三明治折叠结构,但存在相当大的结构差异,这些差异对于功能多样性至关重要。Rib 结构域家族主要作为革兰氏阳性细菌表面蛋白中的串联重复模块存在,代表了 Ig 样折叠的另一个重要结构变体。然而,对该家族的结构和功能的探索非常有限,这极大地限制了对其在 Ig 超家族中的进化和意义的理解。在这项工作中,呈现了源自益生菌乳杆菌的 Rib 结构域的高分辨率晶体结构。该蛋白与来自其他细菌的同源结构域具有显著的结构相似性,但表现出显著增强的热稳定性。讨论了有助于这种稳定性的潜在结构特征。此外,存在两个铜结合位点,其中一个位于界面上,表明存在潜在的功能作用,值得进一步研究。