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一项综合系统评价结合相互作用网络分析确定了与牛脾气有关的候选基因和生物学途径。

A Comprehensive Systematic Review Coupled with an Interacting Network Analysis Identified Candidate Genes and Biological Pathways Related to Bovine Temperament.

机构信息

Laboratorio de Biotecnología Animal, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Reynosa 88710, Mexico.

Department of Animal Science, Texas A&M University, College Station, TX 77843, USA.

出版信息

Genes (Basel). 2024 Jul 25;15(8):981. doi: 10.3390/genes15080981.

Abstract

Comprehension of the genetic basis of temperament has been improved by recent advances in the identification of genes and genetic variants. However, due to the complexity of the temperament traits, the elucidation of the genetic architecture of temperament is incomplete. A systematic review was performed following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement to analyze candidate genes related to bovine temperament, using bovine as the population, SNPs and genes as the exposure, and temperament test as the outcome, as principal search terms for population, exposure, and outcome (PEO) categories to define the scope of the search. The search results allowed the selection of 36 articles after removing duplicates and filtering by relevance. One hundred-two candidate genes associated with temperament traits were identified. The genes were further analyzed to construct an interaction network using the STRING database, resulting in 113 nodes and 346 interactions and the identification of 31 new candidate genes for temperament. Notably, the main genes identified were and members of the Kelch family. The candidate genes displayed interactions with pathways associated with different functions such as AMPA receptors, hormones, neuronal maintenance, protein signaling, neuronal regulation, serotonin synthesis, splicing, and ubiquitination activities. These new findings demonstrate the complexity of interconnected biological processes that regulate behavior and stress response in mammals. This insight now enables our targeted analysis of these newly identified temperament candidate genes in bovines.

摘要

近年来,随着基因和遗传变异的鉴定技术的进步,人们对气质遗传基础的理解得到了提高。然而,由于气质特征的复杂性,气质的遗传结构仍未完全阐明。本研究按照系统评价和荟萃分析的首选报告项目(PRISMA)的声明进行了系统回顾,以分析与牛气质相关的候选基因,以牛为研究人群,单核苷酸多态性(SNP)和基因作为暴露因素,气质测试作为结局,主要搜索术语为人群、暴露和结局(PEO)类别,以确定搜索范围。在去除重复项并通过相关性进行过滤后,搜索结果允许选择 36 篇文章。确定了 102 个与气质特征相关的候选基因。进一步使用 STRING 数据库对这些基因进行分析,构建相互作用网络,得到 113 个节点和 346 个相互作用,并确定了 31 个新的气质候选基因。值得注意的是,主要鉴定的基因是 和 Kelch 家族成员。候选基因与不同功能相关的途径相互作用,如 AMPA 受体、激素、神经元维持、蛋白质信号、神经元调节、血清素合成、剪接和泛素化活性。这些新发现表明,调节哺乳动物行为和应激反应的复杂相互关联的生物过程。现在,我们可以针对这些新鉴定的牛候选气质基因进行有针对性的分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/159d/11354074/5c4c112aeb34/genes-15-00981-g001.jpg

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