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鉴定和预测与幼虫解毒途径相关的差异表达 microRNAs 。

Identification and Prediction of Differentially Expressed MicroRNAs Associated with Detoxification Pathways in Larvae of .

机构信息

Key Laboratory of Integrated Pest Management of Southwest Crops, Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.

Science and Technology Security Center, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China.

出版信息

Genes (Basel). 2024 Aug 3;15(8):1021. doi: 10.3390/genes15081021.

Abstract

poses a severe threat to crops, causing substantial economic losses. The increased use of chemical pesticides has led to resistance in populations. Micro ribonucleic acids (MicroRNAs or miRNAs) are pivotal in insect growth and development. This study aims to identify miRNAs across different developmental stages of to explore differential expression and predict target gene functions. High-throughput sequencing of miRNAs was conducted on eggs, 3rd instar larvae, pupae, and adults. Bioinformatics analyses identified differentially expressed miRNAs specifically in larvae, with candidate miRNAs screened to predict target genes, particularly those involved in detoxification pathways. A total of 184 known miRNAs and 209 novel miRNAs were identified across stages. Comparative analysis revealed 54, 15, and 18 miRNAs differentially expressed in larvae, compared to egg, pupa, and adult stages, respectively. Eight miRNAs showed significant differential expression across stages, validated by quantitative reverse transcription PCR (qRT-PCR). Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses predicted target genes' functions, identifying eight differentially expressed miRNAs targeting 10 gene families associated with detoxification metabolism, including P450s, glutathione S-transferase (GSTs), ATP-binding cassette (ABC) transporters, and sodium channels. These findings elucidate the species-specific miRNA profiles and regulatory mechanisms of detoxification-related genes in larvae, offering insights and strategies for effectively managing this pest.

摘要

对农作物构成严重威胁,造成重大经济损失。化学农药的大量使用导致了种群的抗药性。微小核糖核酸(MicroRNAs 或 miRNAs)在昆虫的生长和发育中起着关键作用。本研究旨在鉴定不同发育阶段的 miRNAs,以探索差异表达并预测靶基因功能。对 不同发育阶段的卵、3 龄幼虫、蛹和成虫进行了 miRNA 的高通量测序。生物信息学分析鉴定了幼虫中特异性差异表达的 miRNAs,筛选候选 miRNA 以预测靶基因,特别是那些参与解毒途径的靶基因。共鉴定到 184 个已知 miRNA 和 209 个新的 miRNA。比较分析显示,与卵、蛹和成虫阶段相比,幼虫中有 54、15 和 18 个 miRNA 差异表达。8 个 miRNA 在不同阶段的差异表达显著,通过定量逆转录 PCR(qRT-PCR)验证。基因本体论和京都基因与基因组百科全书富集分析预测了靶基因的功能,鉴定出 8 个差异表达的 miRNA 靶向与解毒代谢相关的 10 个基因家族,包括 P450s、谷胱甘肽 S-转移酶(GSTs)、ATP 结合盒(ABC)转运蛋白和钠通道。这些发现阐明了 幼虫中物种特异性的 miRNA 图谱和解毒相关基因的调控机制,为有效管理这种害虫提供了思路和策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89f3/11353827/18365dcc16b4/genes-15-01021-g001.jpg

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