Division of Microbiology and Molecular Genetics, School of Medicine, Loma Linda University, Loma Linda, California, USA.
Mol Oral Microbiol. 2024 Dec;39(6):507-520. doi: 10.1111/omi.12482. Epub 2024 Aug 29.
The PG1037 gene is part of the uvrA-PG1037-pcrA operon in Porphyromonas gingivalis. It encodes for a protein of unknown function upregulated under hydrogen peroxide (HO)-induced oxidative stress. Bioinformatic analysis shows that PG1037 has a zinc-finger motif, two peroxidase motifs, and one cytidylate kinase domain. The aim of this study is to characterize further the role of the PG1037 recombinant protein in the unique 8-oxoG repair system in P. gingivalis.
PG1037 recombinant proteins with deletions in the zinc-finger or peroxidase motifs were created. Electrophoretic mobility shift assays were used to evaluate the ability of the recombinant proteins to bind 8-oxoG-containing oligonucleotides. Zinc binding, peroxidase, and Fenton reaction assays were used to assess the functional roles of the rPG1037 protein. A bacterial adenylate cyclase two-bride assay was used to identify the partner protein of PG1037 in the repair of 8-oxoG.
The recombinant PG1037 (rPG1037) protein carrying an N-terminal His-tag demonstrated an ability to recognize and bind 8-oxoG-containing oligonucleotide. In contrast to the wild-type rPG1037 protein, the zinc-finger motif deletion resulted in the loss of zinc and 8-oxoG binding activities. A deletion of the peroxidase motif-1 showed a decrease in peroxidase activity. Using a bacterial adenylate cyclase two-hybrid system, there was no observed protein-protein interaction of PG1037 with UvrA (PG1036), PcrA (PG1038), or mismatch repair system proteins.
Taken together, the results show that PG1037 is an important member of a novel mechanism that recognizes and repairs oxidative stress-induced DNA damage in P. gingivalis.
PG1037 基因是牙龈卟啉单胞菌 uvrA-PG1037-pcrA 操纵子的一部分。它编码一种未知功能的蛋白质,在过氧化氢(HO)诱导的氧化应激下上调。生物信息学分析表明,PG1037 具有锌指模体、两个过氧化物酶模体和一个胞嘧啶核苷酸激酶结构域。本研究的目的是进一步表征 PG1037 重组蛋白在牙龈卟啉单胞菌独特的 8-氧代鸟嘌呤修复系统中的作用。
创建了缺失锌指或过氧化物酶模体的 PG1037 重组蛋白。电泳迁移率变动分析用于评估重组蛋白结合含 8-氧代鸟嘌呤寡核苷酸的能力。锌结合、过氧化物酶和芬顿反应测定用于评估 rPG1037 蛋白的功能作用。细菌腺苷酸环化酶双桥测定用于鉴定修复 8-氧代鸟嘌呤中的 PG1037 伴侣蛋白。
携带 N 端 His 标签的重组 PG1037(rPG1037)蛋白表现出识别和结合含 8-氧代鸟嘌呤寡核苷酸的能力。与野生型 rPG1037 蛋白相比,锌指模体缺失导致锌和 8-氧代鸟嘌呤结合活性丧失。过氧化物酶模体-1 的缺失显示过氧化物酶活性降低。使用细菌腺苷酸环化酶双杂交系统,未观察到 PG1037 与 UvrA(PG1036)、PcrA(PG1038)或错配修复系统蛋白之间的蛋白质-蛋白质相互作用。
总之,结果表明 PG1037 是识别和修复牙龈卟啉单胞菌中氧化应激诱导的 DNA 损伤的新型机制的重要成员。