Jaska Lucia, Birkedal Rikke, Laasmaa Martin, Vendelin Marko
Laboratory of Systems Biology, Department of Cybernetics, Tallinn University of Technology, Tallinn, Estonia.
Bio Protoc. 2024 Aug 20;14(16):e5053. doi: 10.21769/BioProtoc.5053.
Gel image analyses are often difficult to reproduce, as the most commonly used software, the ImageJ Gels plugin, does not automatically record any steps in the analysis process. This protocol provides detailed steps for image analysis using IOCBIO Gel software with western blot as an example; however, the protocol is applicable to all images obtained by electrophoresis, such as Southern blotting, northern blotting, and isoelectric focusing. IOCBIO Gel allows multiple sample analyses, linking the original image to all the operations performed on it, which can be stored in a central database or on a PC, ensuring ease of access and the possibility to perform corrections at each analysis stage. In addition, IOCBIO Gel is lightweight, with only minimal computer requirements. Key features • Free and open-source software for analyzing gel images. • Reproducibility. • Can be used with images obtained by electrophoresis, such as western blotting, Southern blotting, isoelectric focusing, and more.
凝胶图像分析往往难以重复,因为最常用的软件ImageJ Gels插件不会自动记录分析过程中的任何步骤。本方案以蛋白质印迹为例,提供了使用IOCBIO Gel软件进行图像分析的详细步骤;不过,该方案适用于通过电泳获得的所有图像,如Southern印迹、Northern印迹和等电聚焦。IOCBIO Gel允许进行多个样品分析,将原始图像与对其执行的所有操作相关联,这些操作可以存储在中央数据库或个人电脑上,确保易于访问,并有可能在每个分析阶段进行校正。此外,IOCBIO Gel占用空间小,对计算机的要求极低。关键特性 • 用于分析凝胶图像的免费开源软件。 • 可重复性。 • 可用于通过电泳获得的图像,如蛋白质印迹、Southern印迹、等电聚焦等。