Nayak Rojalin, Mallick Bibekanand
RNAi and Functional Genomics Lab., Department of Life Science, National Institute of Technology Rourkela, Rourkela, Odisha 769008, India.
RNAi and Functional Genomics Lab., Department of Life Science, National Institute of Technology Rourkela, Rourkela, Odisha 769008, India.
Cancer Genet. 2024 Nov;288-289:20-31. doi: 10.1016/j.cancergen.2024.08.082. Epub 2024 Aug 26.
Glioblastoma (GBM) is one of the most aggressive and fatal cancers, for which Temozolomide (TMZ) chemo drug is commonly used for its treatment. However, patients gradually develop resistance to this drug, leading to tumor relapse. In our previous study, we have identified lncRNAs that regulate chemoresistance through the competing endogenous RNA (ceRNA) mechanism. In this study, we tried to find FDA-approved drugs against the target proteins of these ceRNA networks through drug repurposing using differential gene expression profiles, which could be used to nullify the effect of lncRNAs and promote the sensitivity of TMZ in GBM. We performed molecular docking and simulation studies of predicted repurposed drugs and their targets. Among the predicted repurposed drugs, we found BMS345541 has a higher binding affinity towards its target protein - FOXG1, making it a more stable complex with FOXG1-DNA. The ADMET analysis of this drug BMS345541 shows a higher half-life and lower cytotoxicity level than other predicted repurposed drugs. Hence, we conjecture that this could be a better drug for increasing the sensitivity of TMZ for treating GBM patients.
胶质母细胞瘤(GBM)是最具侵袭性和致命性的癌症之一,替莫唑胺(TMZ)化疗药物常用于其治疗。然而,患者会逐渐对这种药物产生耐药性,导致肿瘤复发。在我们之前的研究中,我们已经鉴定出通过竞争性内源RNA(ceRNA)机制调节化疗耐药性的长链非编码RNA(lncRNA)。在本研究中,我们试图通过利用差异基因表达谱进行药物重新利用,找到针对这些ceRNA网络靶蛋白的美国食品药品监督管理局(FDA)批准的药物,这些药物可用于消除lncRNA的作用并提高TMZ对GBM的敏感性。我们对预测的重新利用药物及其靶点进行了分子对接和模拟研究。在预测的重新利用药物中,我们发现BMS345541对其靶蛋白FOXG1具有更高的结合亲和力,使其与FOXG1-DNA形成更稳定的复合物。对该药物BMS345541的ADMET分析表明,其半衰期比其他预测的重新利用药物更长,细胞毒性水平更低。因此,我们推测这可能是一种更好的药物,可提高TMZ治疗GBM患者的敏感性。