Suppr超能文献

一种采用曲线内坐标和二阶振动微扰理论的新引擎对大分子性质的精确振动和转动-振动贡献

Accurate Vibrational and Ro-Vibrational Contributions to the Properties of Large Molecules by a New Engine Employing Curvilinear Internal Coordinates and Vibrational Perturbation Theory to Second Order.

作者信息

Mendolicchio Marco, Barone Vincenzo

机构信息

Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy.

INSTM, Via Giuseppe Giusti 9, I-50121 Firenze, Italy.

出版信息

J Chem Theory Comput. 2024 Aug 31. doi: 10.1021/acs.jctc.4c00857.

Abstract

The unbiased comparison between theory and experiment requires approaches more sophisticated than the basic harmonic-oscillator rigid-rotor model, for taking into account vibrational averaging effects and ro-vibrational couplings in molecules of increasing size. Second-order vibrational perturbation theory based on curvilinear internal coordinates (ICs) offers a remarkable compromise between accuracy and computational cost, thanks to the reduction of mode-mode couplings with respect to their counterparts based on Cartesian coordinates. Therefore, we have developed, implemented, and validated a general engine employing ICs, which allows the accurate evaluation of vibrational averages and ro-vibrational couplings for molecules containing up to about 50 atoms beyond the harmonic approximation. After validation of the new tool for relatively small molecules, the effectiveness of ICs has been demonstrated for some flexible and/or quite large molecular bricks of life.

摘要

要在理论与实验之间进行无偏比较,需要比基本的谐振子刚性转子模型更复杂的方法,以便考虑到随着分子尺寸增大而产生的振动平均效应和转动 - 振动耦合。基于曲线内坐标(ICs)的二阶振动微扰理论在准确性和计算成本之间实现了显著的平衡,这得益于相对于基于笛卡尔坐标的对应方法,其模式 - 模式耦合有所减少。因此,我们开发、实现并验证了一个采用ICs的通用引擎,它能够在谐波近似之外,对包含多达约50个原子的分子准确评估振动平均值和转动 - 振动耦合。在针对相对较小的分子验证了新工具之后,ICs在一些灵活的和/或相当大的生命分子构建单元上的有效性也得到了证明。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验