• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种采用曲线内坐标和二阶振动微扰理论的新引擎对大分子性质的精确振动和转动-振动贡献

Accurate Vibrational and Ro-Vibrational Contributions to the Properties of Large Molecules by a New Engine Employing Curvilinear Internal Coordinates and Vibrational Perturbation Theory to Second Order.

作者信息

Mendolicchio Marco, Barone Vincenzo

机构信息

Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy.

INSTM, Via Giuseppe Giusti 9, I-50121 Firenze, Italy.

出版信息

J Chem Theory Comput. 2024 Aug 31. doi: 10.1021/acs.jctc.4c00857.

DOI:10.1021/acs.jctc.4c00857
PMID:39215708
Abstract

The unbiased comparison between theory and experiment requires approaches more sophisticated than the basic harmonic-oscillator rigid-rotor model, for taking into account vibrational averaging effects and ro-vibrational couplings in molecules of increasing size. Second-order vibrational perturbation theory based on curvilinear internal coordinates (ICs) offers a remarkable compromise between accuracy and computational cost, thanks to the reduction of mode-mode couplings with respect to their counterparts based on Cartesian coordinates. Therefore, we have developed, implemented, and validated a general engine employing ICs, which allows the accurate evaluation of vibrational averages and ro-vibrational couplings for molecules containing up to about 50 atoms beyond the harmonic approximation. After validation of the new tool for relatively small molecules, the effectiveness of ICs has been demonstrated for some flexible and/or quite large molecular bricks of life.

摘要

要在理论与实验之间进行无偏比较,需要比基本的谐振子刚性转子模型更复杂的方法,以便考虑到随着分子尺寸增大而产生的振动平均效应和转动 - 振动耦合。基于曲线内坐标(ICs)的二阶振动微扰理论在准确性和计算成本之间实现了显著的平衡,这得益于相对于基于笛卡尔坐标的对应方法,其模式 - 模式耦合有所减少。因此,我们开发、实现并验证了一个采用ICs的通用引擎,它能够在谐波近似之外,对包含多达约50个原子的分子准确评估振动平均值和转动 - 振动耦合。在针对相对较小的分子验证了新工具之后,ICs在一些灵活的和/或相当大的生命分子构建单元上的有效性也得到了证明。

相似文献

1
Accurate Vibrational and Ro-Vibrational Contributions to the Properties of Large Molecules by a New Engine Employing Curvilinear Internal Coordinates and Vibrational Perturbation Theory to Second Order.一种采用曲线内坐标和二阶振动微扰理论的新引擎对大分子性质的精确振动和转动-振动贡献
J Chem Theory Comput. 2024 Aug 31. doi: 10.1021/acs.jctc.4c00857.
2
Perturb-Then-Diagonalize Vibrational Engine Exploiting Curvilinear Internal Coordinates.利用曲线型内坐标的微扰-对角化振动引擎。
J Chem Theory Comput. 2022 Dec 13;18(12):7603-7619. doi: 10.1021/acs.jctc.2c00773. Epub 2022 Nov 2.
3
Unbiased Comparison between Theoretical and Experimental Molecular Structures and Properties: Toward an Accurate Reduced-Cost Evaluation of Vibrational Contributions.理论与实验分子结构及性质的无偏比较:迈向振动贡献的精确低成本评估
J Chem Theory Comput. 2024 Apr 9;20(7):2842-2857. doi: 10.1021/acs.jctc.4c00023. Epub 2024 Mar 31.
4
Automatic differentiation method for numerical construction of the rotational-vibrational Hamiltonian as a power series in the curvilinear internal coordinates using the Eckart frame.使用埃卡特坐标系,以曲线内坐标中的幂级数形式数值构建转动-振动哈密顿量的自动微分方法。
J Chem Phys. 2015 Jul 7;143(1):014105. doi: 10.1063/1.4923039.
5
Ab initio effective rotational and rovibrational Hamiltonians for non-rigid systems via curvilinear second order vibrational Møller-Plesset perturbation theory.通过曲线二阶振动莫勒-普列斯特定则微扰理论计算非刚性体系的从头算有效转动和振转哈密顿量。
J Chem Phys. 2016 Nov 7;145(17):174106. doi: 10.1063/1.4966234.
6
A second-order perturbation theory route to vibrational averages and transition properties of molecules: general formulation and application to infrared and vibrational circular dichroism spectroscopies.二阶微扰理论在分子振动平均值和跃迁性质中的应用:一般公式及在红外和振动圆二色性光谱学中的应用。
J Chem Phys. 2012 Mar 28;136(12):124108. doi: 10.1063/1.3695210.
7
General Perturb-Then-Diagonalize Model for the Vibrational Frequencies and Intensities of Molecules Belonging to Abelian and Non-Abelian Symmetry Groups.适用于属于阿贝尔和非阿贝尔对称群分子振动频率和强度的通用微扰-对角化模型
J Chem Theory Comput. 2021 Jul 13;17(7):4332-4358. doi: 10.1021/acs.jctc.1c00240. Epub 2021 Jun 4.
8
On the choice of coordinates in anharmonic theoretical vibrational spectroscopy: Harmonic vs. anharmonic coupling in vibrational configuration interaction.在非谐理论振动光谱学中的坐标选择:振动构型相互作用中的谐波与非谐波耦合。
J Chem Phys. 2019 Feb 7;150(5):054107. doi: 10.1063/1.5083186.
9
Generalized Vibrational Perturbation Theory for Rotovibrational Energies of Linear, Symmetric and Asymmetric Tops: Theory, Approximations, and Automated Approaches to Deal with Medium-to-Large Molecular Systems.线性、对称和非对称陀螺转子振动能量的广义振动微扰理论:理论、近似方法以及处理中大型分子系统的自动化方法
Int J Quantum Chem. 2015 Aug 5;115(15):948-982. doi: 10.1002/qua.24931. Epub 2015 Jun 16.
10
Approximate inclusion of four-mode couplings in vibrational coupled-cluster theory.四模耦合在振动耦合簇理论中的近似包含。
J Chem Phys. 2012 May 28;136(20):204118. doi: 10.1063/1.4721626.