• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过消减基因组学、分子对接和分子动力学模拟方法鉴定肽聚糖糖基转移酶 FtsI 作为针对 和 血清型的潜在药物靶标。

Identification of Peptidoglycan Glycosyltransferase FtsI as a Potential Drug Target against and Serovars Through Subtractive Genomics, Molecular Docking and Molecular Dynamics Simulation Approaches.

机构信息

Department of Bioinformatics and Biotechnology, Government College University Faisalabad (GCUF), Faisalabad, Pakistan.

出版信息

Curr Pharm Des. 2024;30(36):2882-2895. doi: 10.2174/0113816128332400240827061932.

DOI:10.2174/0113816128332400240827061932
PMID:39219121
Abstract

INTRODUCTION

serovar Enteritidis and serovar Typhimurium are among the main causative agents of nontyphoidal Salmonella infections, imposing a significant global health burden. The emergence of antibiotic resistance in these pathogens underscores the need for innovative therapeutic strategies.

OBJECTIVE

To identify proteins as potential drug targets against and Salmonella Typhimurium serovars using approaches.

METHODS

In this study, a subtractive genomics approach was employed to identify potential drug targets. The whole proteome of PT4 and (D23580), containing 393 and 478 proteins, respectively, was analyzed through subtractive genomics to identify human homologous proteins of the pathogen and also the proteins linked to shared metabolic pathways of pathogen and its host.

RESULTS

Subsequent analysis revealed 19 common essential proteins shared by both strains. To ensure hostspecificity, we identified 10 non-homologous proteins absent in humans. Among these proteins, peptidoglycan glycosyltransferase FtsI was pivotal, participating in pathogen-specific pathways and making it a promising drug target. Molecular docking highlighted two potential compounds, Balsamenonon A and 3,3',4',7-Tetrahydroxyflavylium, with strong binding affinities with FtsI. A 100 ns molecular dynamics simulation having 10,000 frames substantiated the strong binding affinity and demonstrated the enduring stability of the predicted compounds at the docked site.

CONCLUSION

The findings in this study provide the foundation for drug development strategies against Salmonella infections, which can contribute to the prospective development of natural and cost-effective drugs targeting and .

摘要

简介

肠炎沙门氏菌和鼠伤寒沙门氏菌是引起非伤寒型沙门氏菌感染的主要病原体之一,给全球健康带来了重大负担。这些病原体对抗生素的耐药性的出现突显了需要创新的治疗策略。

目的

使用消减基因组学方法鉴定针对肠炎沙门氏菌和鼠伤寒沙门氏菌血清型的潜在药物靶标。

方法

在这项研究中,使用消减基因组学方法来鉴定潜在的药物靶标。分析了 PT4 和 (D23580)的全蛋白质组,分别包含 393 和 478 种蛋白质,通过消减基因组学来识别病原体和宿主共享代谢途径的人类同源蛋白和相关蛋白。

结果

随后的分析显示,两种菌株共有 19 种共同的必需蛋白。为了确保宿主特异性,我们鉴定出 10 种在人类中不存在的非同源蛋白。在这些蛋白质中,肽聚糖糖基转移酶 FtsI 是至关重要的,它参与病原体特异性途径,使其成为一个有前途的药物靶标。分子对接突出了两种具有强结合亲和力的潜在化合物,Balsamenonon A 和 3,3',4',7-四羟基黄酮,与 FtsI 具有强结合亲和力。具有 10,000 个帧的 100 ns 分子动力学模拟证实了预测化合物在对接部位的强结合亲和力和持久稳定性。

结论

本研究的结果为针对沙门氏菌感染的药物开发策略提供了基础,这有助于针对 和 开发天然和具有成本效益的药物。

相似文献

1
Identification of Peptidoglycan Glycosyltransferase FtsI as a Potential Drug Target against and Serovars Through Subtractive Genomics, Molecular Docking and Molecular Dynamics Simulation Approaches.通过消减基因组学、分子对接和分子动力学模拟方法鉴定肽聚糖糖基转移酶 FtsI 作为针对 和 血清型的潜在药物靶标。
Curr Pharm Des. 2024;30(36):2882-2895. doi: 10.2174/0113816128332400240827061932.
2
Refined live attenuated Salmonella enterica serovar Typhimurium and Enteritidis vaccines mediate homologous and heterologous serogroup protection in mice.精制的减毒活肠炎沙门氏菌鼠伤寒血清型和肠炎血清型疫苗介导小鼠的同源和异源血清群保护。
Infect Immun. 2015 Dec;83(12):4504-12. doi: 10.1128/IAI.00924-15. Epub 2015 Sep 8.
3
Multiple Drug Resistance and Virulence Profiling of Salmonella enterica Serovars Typhimurium and Enteritidis from Poultry Farms of Faisalabad, Pakistan.来自巴基斯坦费萨拉巴德家禽养殖场的鼠伤寒沙门氏菌和肠炎沙门氏菌的多重耐药性及毒力分析
Microb Drug Resist. 2019 Jan/Feb;25(1):133-142. doi: 10.1089/mdr.2018.0121. Epub 2018 Aug 16.
4
Genetic basis of multidrug resistance in Salmonella enterica serovars Enteritidis and Typhimurium isolated from diarrheic calves in Egypt.从埃及腹泻犊牛分离出的肠炎沙门氏菌肠炎血清型和鼠伤寒血清型多重耐药性的遗传基础。
Acta Trop. 2009 Aug;111(2):144-9. doi: 10.1016/j.actatropica.2009.04.004. Epub 2009 Apr 16.
5
Application of the Subtractive Genomics and Molecular Docking Analysis for the Identification of Novel Putative Drug Targets against subsp. Poona.应用消减基因组学和分子对接分析鉴定针对 subsp. Poona 的新型潜在药物靶标
Biomed Res Int. 2017;2017:3783714. doi: 10.1155/2017/3783714. Epub 2017 Aug 17.
6
Antimicrobial resistance in Salmonella enterica serovars Enteritidis and Typhimurium isolated from animals in Korea: comparison of phenotypic and genotypic resistance characterization.从韩国动物中分离出的肠炎沙门氏菌肠炎血清型和鼠伤寒血清型的抗菌药物耐药性:表型和基因型耐药特征比较
Vet Microbiol. 2002 May 24;86(4):295-301. doi: 10.1016/s0378-1135(02)00009-3.
7
Characterization of class I integrons in clinical strains of Salmonella enterica subsp. enterica serovars Typhimurium and Enteritidis from Norwegian hospitals.挪威医院中肠炎沙门氏菌肠炎亚种鼠伤寒血清型和肠炎血清型临床菌株中I类整合子的特征分析。
J Med Microbiol. 2003 Feb;52(Pt 2):141-9. doi: 10.1099/jmm.0.04958-0.
8
Increasing prevalence and dissemination of invasive nontyphoidal Salmonella serotype Typhimurium with multidrug resistance in hospitalized patients from southern Brazil.巴西南部住院患者中具有多重耐药性的侵袭性非伤寒沙门氏菌血清型鼠伤寒的流行和传播不断增加。
Braz J Infect Dis. 2018 Sep-Oct;22(5):424-432. doi: 10.1016/j.bjid.2018.08.002. Epub 2018 Sep 18.
9
Genomic diversity within phage types of Salmonella enterica ssp. enterica serotypes Enteritidis and Typhimurium.肠炎沙门氏菌亚种肠炎血清型肠炎沙门氏菌和鼠伤寒沙门氏菌噬菌体类型内的基因组多样性。
Foodborne Pathog Dis. 2006 Spring;3(1):97-105. doi: 10.1089/fpd.2006.3.97.
10
Phage types, antibiotic susceptibilities and plasmid profiles of Salmonella typhimurium and Salmonella enteritidis strains isolated in Istanbul, Turkey.在土耳其伊斯坦布尔分离出的鼠伤寒沙门氏菌和肠炎沙门氏菌菌株的噬菌体类型、抗生素敏感性及质粒图谱
Clin Microbiol Infect. 2000 Nov;6(11):593-9. doi: 10.1046/j.1469-0691.2000.00132.x.

本文引用的文献

1
Molecular docking-based virtual screening, drug-likeness, and pharmacokinetic profiling of some anti- cephalosporin derivatives.基于分子对接的某些抗头孢菌素衍生物的虚拟筛选、类药性和药代动力学分析
J Taibah Univ Med Sci. 2023 Jun 9;18(6):1417-1431. doi: 10.1016/j.jtumed.2023.05.021. eCollection 2023 Dec.
2
Conformational energies of reference organic molecules: benchmarking of common efficient computational methods against coupled cluster theory.参考有机分子的构象能:常见高效计算方法与耦合簇理论的基准比较。
J Comput Aided Mol Des. 2023 Dec;37(12):607-656. doi: 10.1007/s10822-023-00513-5. Epub 2023 Aug 19.
3
Screening of Potential Inhibitors Targeting the Main Protease Structure of SARS-CoV-2 via Molecular Docking, and Approach with Molecular Dynamics, RMSD, RMSF, H-Bond, SASA and MMGBSA.
通过分子对接和分子动力学、RMSD、RMSF、氢键、SASA 和 MMGBSA 方法筛选针对 SARS-CoV-2 主要蛋白酶结构的潜在抑制剂。
Mol Biotechnol. 2024 Aug;66(8):1919-1933. doi: 10.1007/s12033-023-00831-x. Epub 2023 Jul 25.
4
Integrated Bioinformatics-Based Subtractive Genomics Approach to Decipher the Therapeutic Drug Target and Its Possible Intervention against Brucellosis.基于综合生物信息学的消减基因组学方法来破译治疗药物靶点及其对布鲁氏菌病的可能干预措施。
Bioengineering (Basel). 2022 Nov 1;9(11):633. doi: 10.3390/bioengineering9110633.
5
Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants.基于 AlphaFold 对蛋白质复合物建模的基准测试揭示了准确性的决定因素。
Protein Sci. 2022 Aug;31(8):e4379. doi: 10.1002/pro.4379.
6
Identification of Putative Vaccine and Drug Targets against the Methicillin-Resistant by Reverse Vaccinology and Subtractive Genomics Approaches.通过反向疫苗学和消减基因组学方法鉴定耐甲氧西林的潜在疫苗和药物靶标。
Molecules. 2022 Mar 24;27(7):2083. doi: 10.3390/molecules27072083.
7
UCSF ChimeraX: Structure visualization for researchers, educators, and developers.UCSF ChimeraX:面向研究人员、教育工作者和开发者的结构可视化工具。
Protein Sci. 2021 Jan;30(1):70-82. doi: 10.1002/pro.3943. Epub 2020 Oct 22.
8
Proteomics of SARS-CoV-2-infected host cells reveals therapy targets.SARS-CoV-2 感染宿主细胞的蛋白质组学研究揭示了治疗靶点。
Nature. 2020 Jul;583(7816):469-472. doi: 10.1038/s41586-020-2332-7. Epub 2020 May 14.
9
The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid.非洲沙门氏菌 Typhimurium ST313 菌株 D23580 的适应性景观揭示了 pBT1 质粒的独特性质。
PLoS Pathog. 2019 Sep 27;15(9):e1007948. doi: 10.1371/journal.ppat.1007948. eCollection 2019 Sep.
10
Geptop 2.0: An Updated, More Precise, and Faster Geptop Server for Identification of Prokaryotic Essential Genes.Geptop 2.0:用于识别原核生物必需基因的更新、更精确且更快的Geptop服务器。
Front Microbiol. 2019 Jun 4;10:1236. doi: 10.3389/fmicb.2019.01236. eCollection 2019.