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细菌β-碳酸酐酶。

Bacterial β-carbonic anhydrases.

机构信息

Dipartimento di Chimica "Ugo Schiff", Università di Firenze, Sesto Fiorentino, Firenze, Italia.

出版信息

Enzymes. 2024;55:65-91. doi: 10.1016/bs.enz.2024.05.009. Epub 2024 Aug 16.

DOI:10.1016/bs.enz.2024.05.009
PMID:39222999
Abstract

β-Carbonic anhydrases (β-CA; EC 4.2.1.1) are widespread zinc metalloenzymes which catalyze the interconversion of carbon dioxide and bicarbonate. They have been isolated in many pathogenic and non-pathogenic bacteria where they are involved in multiple roles, often related to their growth and survival. β-CAs are structurally distant from the CAs of other classes. In the active site, located at the interface of a fundamental dimer, the zinc ion is coordinated to two cysteines and one histidine. β-CAs have been divided in two subgroups depending on the nature of the fourth ligand on the zinc ion: class I have a zinc open configuration with a hydroxide ion completing the metal coordination, which is the catalytically active species in the mechanism proposed for the β-CAs similar to the well-known of α-CAs, while in class II an Asp residue substitute the hydroxide. This latter active site configuration has been showed to be typical of an inactive form at pH below 8. An Asp-Arg dyad is thought to play a key role in the pH-induced catalytic switch regulating the opening and closing of the active site in class II β-CAs, by displacing the zinc-bound solvent molecule. An allosteric site well-suited for bicarbonate stabilizes the inactive form. This bicarbonate binding site is composed by a triad of well conserved residues, strictly connected to the coordination state of the zinc ion. Moreover, the escort site is a promiscuous site for a variety of ligands, including bicarbonate, at the dimer interface, which may be the route for bicarbonate to the allosteric site.

摘要

β-碳酸酐酶(β-CA;EC 4.2.1.1)是广泛存在的锌金属酶,可催化二氧化碳和碳酸氢盐之间的相互转化。它们已在许多致病性和非致病性细菌中被分离出来,在这些细菌中,它们参与多种角色,通常与它们的生长和生存有关。β-CAs 在结构上与其他类别的 CA 相去甚远。在活性位点,位于基本二聚体的界面上,锌离子与两个半胱氨酸和一个组氨酸配位。β-CAs 根据锌离子上第四个配体的性质分为两个亚组:I 类具有锌开口构型,氢氧根离子完成金属配位,这是在机制中提出的β-CAs 与众所周知的α-CAs 相似的催化活性物质,而在 II 类中,天冬氨酸残基取代了氢氧根离子。这种后一种活性位点构型已被证明是 pH 低于 8 时无活性形式的典型特征。天冬氨酸-精氨酸二联体被认为在 pH 诱导的催化开关中发挥关键作用,调节 II 类β-CAs 活性位点的开闭,通过置换锌结合的溶剂分子。一个适合于稳定碳酸氢盐的变构位点。这个碳酸氢盐结合位点由一组三个严格与锌离子配位状态相关的保守残基组成。此外,护送位点是二聚体界面上各种配体(包括碳酸氢盐)的混杂位点,这可能是碳酸氢盐进入变构位点的途径。

相似文献

1
Bacterial β-carbonic anhydrases.细菌β-碳酸酐酶。
Enzymes. 2024;55:65-91. doi: 10.1016/bs.enz.2024.05.009. Epub 2024 Aug 16.
2
An overview of the alpha-, beta- and gamma-carbonic anhydrases from Bacteria: can bacterial carbonic anhydrases shed new light on evolution of bacteria?细菌中α-、β-和γ-碳酸酐酶概述:细菌碳酸酐酶能否为细菌的进化带来新的启示?
J Enzyme Inhib Med Chem. 2015 Apr;30(2):325-32. doi: 10.3109/14756366.2014.910202. Epub 2014 Apr 25.
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Structure and inhibition studies of a type II beta-carbonic anhydrase psCA3 from Pseudomonas aeruginosa.铜绿假单胞菌II型β-碳酸酐酶psCA3的结构与抑制研究
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Crystal structure and kinetic studies of a tetrameric type II β-carbonic anhydrase from the pathogenic bacterium Vibrio cholerae.来自致病性细菌霍乱弧菌的四聚体型IIβ-碳酸酐酶的晶体结构和动力学研究。
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Carbonic anhydrases--an overview.碳酸酐酶——概述
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Crystallographic analysis of Thr-200-->His human carbonic anhydrase II and its complex with the substrate, HCO3-.苏氨酸-200→组氨酸的人碳酸酐酶II及其与底物HCO₃⁻复合物的晶体学分析
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Evidence for a bicarbonate "escort" site in Haemophilus influenzae beta-carbonic anhydrase .证据表明流感嗜血杆菌β-碳酸酐酶存在碳酸氢盐“伴侣”结合位点。
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The structural basis of the low catalytic activities of the two minor β-carbonic anhydrases of the filamentous fungus Aspergillus fumigatus.丝状真菌烟曲霉的两种次要β-碳酸酐酶的低催化活性的结构基础。
J Struct Biol. 2019 Oct 1;208(1):61-68. doi: 10.1016/j.jsb.2019.07.011. Epub 2019 Jul 31.
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Carbon Dioxide "Trapped" in a β-Carbonic Anhydrase.被困在β-碳酸酐酶中的二氧化碳
Biochemistry. 2015 Nov 3;54(43):6631-8. doi: 10.1021/acs.biochem.5b00987. Epub 2015 Oct 16.
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Carbonic anhydrases as targets for medicinal chemistry.碳酸酐酶作为药物化学的靶点
Bioorg Med Chem. 2007 Jul 1;15(13):4336-50. doi: 10.1016/j.bmc.2007.04.020. Epub 2007 Apr 19.

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