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细菌β-碳酸酐酶。

Bacterial β-carbonic anhydrases.

机构信息

Dipartimento di Chimica "Ugo Schiff", Università di Firenze, Sesto Fiorentino, Firenze, Italia.

出版信息

Enzymes. 2024;55:65-91. doi: 10.1016/bs.enz.2024.05.009. Epub 2024 Aug 16.

Abstract

β-Carbonic anhydrases (β-CA; EC 4.2.1.1) are widespread zinc metalloenzymes which catalyze the interconversion of carbon dioxide and bicarbonate. They have been isolated in many pathogenic and non-pathogenic bacteria where they are involved in multiple roles, often related to their growth and survival. β-CAs are structurally distant from the CAs of other classes. In the active site, located at the interface of a fundamental dimer, the zinc ion is coordinated to two cysteines and one histidine. β-CAs have been divided in two subgroups depending on the nature of the fourth ligand on the zinc ion: class I have a zinc open configuration with a hydroxide ion completing the metal coordination, which is the catalytically active species in the mechanism proposed for the β-CAs similar to the well-known of α-CAs, while in class II an Asp residue substitute the hydroxide. This latter active site configuration has been showed to be typical of an inactive form at pH below 8. An Asp-Arg dyad is thought to play a key role in the pH-induced catalytic switch regulating the opening and closing of the active site in class II β-CAs, by displacing the zinc-bound solvent molecule. An allosteric site well-suited for bicarbonate stabilizes the inactive form. This bicarbonate binding site is composed by a triad of well conserved residues, strictly connected to the coordination state of the zinc ion. Moreover, the escort site is a promiscuous site for a variety of ligands, including bicarbonate, at the dimer interface, which may be the route for bicarbonate to the allosteric site.

摘要

β-碳酸酐酶(β-CA;EC 4.2.1.1)是广泛存在的锌金属酶,可催化二氧化碳和碳酸氢盐之间的相互转化。它们已在许多致病性和非致病性细菌中被分离出来,在这些细菌中,它们参与多种角色,通常与它们的生长和生存有关。β-CAs 在结构上与其他类别的 CA 相去甚远。在活性位点,位于基本二聚体的界面上,锌离子与两个半胱氨酸和一个组氨酸配位。β-CAs 根据锌离子上第四个配体的性质分为两个亚组:I 类具有锌开口构型,氢氧根离子完成金属配位,这是在机制中提出的β-CAs 与众所周知的α-CAs 相似的催化活性物质,而在 II 类中,天冬氨酸残基取代了氢氧根离子。这种后一种活性位点构型已被证明是 pH 低于 8 时无活性形式的典型特征。天冬氨酸-精氨酸二联体被认为在 pH 诱导的催化开关中发挥关键作用,调节 II 类β-CAs 活性位点的开闭,通过置换锌结合的溶剂分子。一个适合于稳定碳酸氢盐的变构位点。这个碳酸氢盐结合位点由一组三个严格与锌离子配位状态相关的保守残基组成。此外,护送位点是二聚体界面上各种配体(包括碳酸氢盐)的混杂位点,这可能是碳酸氢盐进入变构位点的途径。

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