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利用初生重预测杜洛克和长白猪后续生长性状的遗传优势。

Use of birth weight as a predictor of genetic merit of subsequent growth traits in Duroc and Landrace pigs.

机构信息

College of Animal Science, Henan Agricultural University, Zhengzhou 450046, China.

Animal Husbandry and Veterinary Research Institute of Hainan Academy of Agricultural Sciences, Sanya 572000, Hainan, China.

出版信息

Animal. 2024 Sep;18(9):101284. doi: 10.1016/j.animal.2024.101284. Epub 2024 Aug 3.

Abstract

Analysis of correlation between the early testable phenotypes of piglets and the final performance of pigs can serve the early selection for breeding. The objectives of this study were to estimate the genetic parameters for birth weight (BtW), age (AGE) and backfat thickness (BF) up to 115 kg BW and to analyse the relationships among these three traits, and to estimate the accuracy of using BtW to predict estimated breeding values (EBVs) of AGE and BF in Landrace and Duroc pigs. Data on 26 614 Landrace and 19 984 Duroc pigs, born between 2001 and 2018, were collected from the core breeding group of a farm. All pigs were recorded for phenotypes including BtW, AGE and BF. The factors affecting these three traits were analysed using R v4.2.0 Software. The population genetic parameters and breeding values of three traits were estimated by using a multitrait animal model based on AI plate of DMU software. Heritabilities for BtW, AGE and BF were moderate to high for Landrace (0.437, 0.282and 0.137, respectively) and Duroc breeds (0.369, 0.279 and 0.148). BtW was genetically correlated with AGE and BF in Landrace (-0.213, 0.037) and Duroc (-0.214, 0.025). AGE was negatively genetically correlated with BF in both Landrace (-0.036) and Duroc (-0.057) pigs. The heritability of BtW, AGE and BF of Landrace pigs and Duroc pigs were 0.148, 0.182 and 0.075 and 0.168, 0.159 and 0.120, respectively, by taking into account of the litter effect. BtW was genetically correlated with AGE and BF in Landrace (-0.094, 0.002) and Duroc (-0.199, -0.052). AGE was negatively genetically correlated with BF in both Landrace (-0.034) and Duroc (-0.153) pigs. The variances between total individual BtW and AGE and BF were then used to predict the EBV of AGE and BF for individuals with AGE or BF phenotypes missing under 10-fold cross-validation. Prediction accuracy was calculated as the Kendall tau-b correlation coefficient between EBVs and EBVs via 10-fold cross-validation. Prediction accuracy for AGE and BF was 0.655 and 0.611 in Landrace, 0.665 and 0.617 in Duroc. After incorporation of the litter effect, the prediction accuracy for AGE and BF increased to 0.690 and 0.665 in Landrace and to 0.705 and 0.649 in Duroc. So, the EBV of AGE and BF phenotypes missing individuals could be predicted by using the available phenotypic data and the easily measured BtW, and litter effect could boost the accuracy of prediction.

摘要

对仔猪早期可测表型与猪最终性能之间的相关性进行分析,可以为选育提供早期选择。本研究的目的是估计出生体重(BtW)、年龄(AGE)和背膘厚(BF)至 115kg BW 的遗传参数,并分析这三个性状之间的关系,估计利用 BtW 预测长白猪和杜洛克猪的估计育种值(EBV)的准确性。本研究收集了 2001 年至 2018 年间出生于一个农场核心育种群的 26614 头长白猪和 19984 头杜洛克猪的数据。所有的猪都记录了 BtW、AGE 和 BF 等表型。使用 R v4.2.0 软件分析这些三个性状的影响因素。基于 AI 板的 DMU 软件,采用多性状动物模型估计三个性状的群体遗传参数和育种值。长白猪(0.437、0.282 和 0.137)和杜洛克猪(0.369、0.279 和 0.148)的 BtW、AGE 和 BF 的遗传力为中等至高。长白猪(-0.213,0.037)和杜洛克猪(-0.214,0.025)中 BtW 与 AGE 和 BF 具有遗传相关性。AGE 在长白猪(-0.036)和杜洛克猪(-0.057)中与 BF 呈负遗传相关。长白猪和杜洛克猪的 BtW、AGE 和 BF 的遗传力分别为 0.148、0.182 和 0.075,以及 0.168、0.159 和 0.120,考虑到窝效应。长白猪(-0.094,0.002)和杜洛克猪(-0.199,-0.052)中 BtW 与 AGE 和 BF 具有遗传相关性。AGE 在长白猪(-0.034)和杜洛克猪(-0.153)中与 BF 呈负遗传相关。然后,使用总个体 BtW 和 AGE 和 BF 的方差来预测缺失 AGE 或 BF 表型的个体的 EBV。预测准确性作为通过 10 倍交叉验证的 EBV 和 EBV 之间的 Kendall tau-b 相关系数进行计算。长白猪的 AGE 和 BF 的预测准确性为 0.655 和 0.611,杜洛克猪的预测准确性为 0.665 和 0.617。在纳入窝效应后,长白猪和杜洛克猪的 AGE 和 BF 的预测准确性分别提高到 0.690 和 0.665,以及 0.705 和 0.649。因此,可以利用可用的表型数据和容易测量的 BtW 预测缺失个体的 AGE 和 BF 的 EBV,窝效应可以提高预测的准确性。

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