Department of Bioinformatics and Biotechnology, Government College University Faisalabad, 38000, Faisalabad, Pakistan.
Department of Bioinformatics and Biotechnology, Government College University Faisalabad, 38000, Faisalabad, Pakistan.
J Proteomics. 2025 Jan 6;310:105309. doi: 10.1016/j.jprot.2024.105309. Epub 2024 Sep 5.
Colon cancer is a significant public health issue, and a deeper understanding of the molecular fundamentals [16] ehind is required to improve sensitivity and curability. This research explored the gene NDUFAF4 as a target of concern due to its link to a mitochondrial function and protein "Relatively of liver tumorigenesis", which remains unclear is attributable to its inclusion into the complex I (CI) pathway. The gene ontology analysis, in turn, showed that NDUFAF4 is a key player in several critical biological phases linked to mitochondrial function and energy metabolism. Furthermore, survival analysis displayed that there was a strong correlation between NDUFAF4 expression and the patients' longevity suggesting that this factor may be important in colon cancer prognosis as well. The TCGA data proved that NDUFAF4 is elevated in colon cancer making the results of the analysis reported credible. All of the above justified the understanding of the role and importance of NDUFAF4 in treating each colon cancer patient as a molecular target. The findings help in understanding the colon cancer pathogenesis and suggest ways for developing more efficient diagnosis and treatment of the disease. SIGNIFICANCE: This research explored the gene NDUFAF4 as a target of concern due to its link to a mitochondrial function and protein "Relatively of liver tumorigenesis", which remains unclear is attributable to its inclusion into the complex I (CI) pathway. Using a comprehensive approach to Gene Ontology analysis, Protein-Protein Interaction network modelling, survival analysis, KEGG pathway analysis, and validation using TCGA data, we identified the activities of NDUFAF4 in colon cancer. The Gene Ontology analysis, in turn, showed that NDUFAF4 is a key player in several critical biological phases linked to mitochondrial function and energy metabolism. The construction of the PPI network illustrates the interactors of NDUFAF4, the functional association protein within the cellular regulatory networks. In addition, survival analysis indicated that there was a considerable relationship between the expression of NDUFAF4 and patient survival, indicating its potential role as a prognostic factor in colon cancer. KEGG pathway analysis suggested that NDUFAF4 plays a role in thermogenesis and mitochondrial biogenesis, biological processes that should be targeted due to their implication in cellular metabolism and cancer onset. The use of TCGA information confirmed the upregulation of NDUFAF4 in colon cancer, thus making the findings of the analysis reported dependable. Overall, our study provided necessary information on the role and significance of NDUFAF4, a potential molecular target in colon cancer cases. These present findings enhance our knowledge of the pathogenesis of colon cancer and open new opportunities for designing novel diagnostic and therapeutic approaches to improve patient outcomes.
结直肠癌是一个重大的公共卫生问题,需要深入了解其分子基础,以提高敏感性和治愈率。本研究探讨了 NDUFAF4 基因作为一个关注的靶点,因为它与线粒体功能和蛋白质“相对肝脏肿瘤发生”有关,但由于其包含在复合物 I (CI) 途径中,其机制尚不清楚。基因本体论分析表明,NDUFAF4 是与线粒体功能和能量代谢相关的几个关键生物学阶段的关键参与者。此外,生存分析显示,NDUFAF4 表达与患者寿命之间存在很强的相关性,这表明该因素在结直肠癌预后中也可能很重要。TCGA 数据证明 NDUFAF4 在结直肠癌中升高,这使得报告的分析结果具有可信度。所有这些都证明了理解 NDUFAF4 在治疗每个结直肠癌患者时作为一个分子靶点的作用和重要性。这些发现有助于了解结直肠癌的发病机制,并为开发更有效的诊断和治疗方法提供了思路。
本研究探讨了 NDUFAF4 基因作为一个关注的靶点,因为它与线粒体功能和蛋白质“相对肝脏肿瘤发生”有关,但由于其包含在复合物 I (CI) 途径中,其机制尚不清楚。
我们采用基因本体论分析、蛋白质-蛋白质相互作用网络建模、生存分析、KEGG 通路分析以及 TCGA 数据验证的综合方法,确定了 NDUFAF4 在结直肠癌中的活性。基因本体论分析表明,NDUFAF4 是与线粒体功能和能量代谢相关的几个关键生物学阶段的关键参与者。
蛋白质-蛋白质相互作用网络的构建说明了 NDUFAF4 的相互作用者,即细胞调节网络中的功能关联蛋白。此外,生存分析表明,NDUFAF4 的表达与患者的生存之间存在相当大的关系,表明其作为结直肠癌预后因素的潜在作用。KEGG 通路分析表明,NDUFAF4 在生热和线粒体生物发生中发挥作用,这些生物学过程由于其在细胞代谢和癌症发生中的作用而应成为靶向治疗的目标。TCGA 信息的使用证实了 NDUFAF4 在结直肠癌中的上调,从而使分析报告的发现具有可信度。
总的来说,我们的研究提供了关于 NDUFAF4 作为结直肠癌潜在分子靶点的作用和意义的必要信息。这些发现提高了我们对结直肠癌发病机制的认识,并为设计新的诊断和治疗方法以改善患者预后提供了新的机会。