基于数据挖掘的膀胱癌生物标志物SHTN1评估及实验验证

Data-mining-based biomarker evaluation and experimental validation of SHTN1 for bladder cancer.

作者信息

Wang Yueying, Wang Jiajun, Zeng Tao, Qi Jiping

机构信息

Department of Pathology, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China.

Department of Urology, The Second Affiliated Hospital of Nanchang University, No.1 Minde Road, Donghu District, Nanchang, Jiangxi, 330006, China.

出版信息

Cancer Genet. 2024 Nov;288-289:43-53. doi: 10.1016/j.cancergen.2024.09.002. Epub 2024 Sep 7.

Abstract

BACKGROUND

Gene therapy in bladder cancer (BLCA) remains an area ripe for exploration. Recent studies have highlighted the crucial role of SHTN1 in the initiation and progression of various cancers and SHTN1 may have interacted with the FGFR gene. However, its specific function in BLCA remains unclear.

MATERIALS AND METHODS

We investigated the association between SHTN1 expression and prognosis, immune infiltration, and the tumor microenvironment (TME) across multiple malignancies using 433 BLCA samples from The Cancer Genome Atlas (TCGA). Differential gene expression analysis, functional annotation via Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) were performed for SHTN1-related genes by using R packages. Immune response and TME scores, along with drug sensitivity profiles of SHTN1, were analyzed using R packages. Immunohistochemistry (IHC) and western blotting were conducted to assess SHTN1 expression in surgical specimens from BLCA patients.CCK8 assay and cells wound healing assay were performed.The bioinformatics was analyzed by R software. Significant differences were evaluated using unpaired t test.

RESULTS

SHTN1 expression levels were significantly elevated in BLCA associated with poor prognosis (p < 0.01). Receiver operating characteristic (ROC) curves and nomograms demonstrated the diagnostic and prognostic efficacy of SHTN1 in BLCA. Notably, SHTN1 expression was higher in high-grade BLCA compared to lower-grade (p = 5.6e-10), a finding corroborated by IHC and western blotting. Pathway enrichment analysis revealed significant involvement of the Neuroactive ligand-receptor interaction and Chemical carcinogenesis - DNA adducts signaling pathways among SHTN1 differentially expressed genes. In terms of immune infiltration, T cells CD8, T cells follicular helper, and dendritic cells were predominant in the SHTN1 low-expression group, whereas macrophages M0 and M2, and mast cells were predominant in the high-expression group. Multivariate Cox regression analysis identified SHTN1 as an independent prognostic factor for overall survival (HR = 2.93; 95 % CI = 1.40-6.13; p = 0.004).CCK8 and wound healing experiments showed that SHTN1 knockdown reduced the cell proliferation and migration. Western blot showed that the EMT pathway was clearly associated with SHTN1.

CONCLUSIONS

Our findings suggest that SHTN1 holds promise as a prognostic and diagnostic biomarker for BLCA. Moreover, it is closely associated with elevated immune infiltration and distinct characteristics of the tumor microenvironment in BLCA.

摘要

背景

膀胱癌(BLCA)的基因治疗仍是一个有待深入探索的领域。最近的研究强调了SHTN1在各种癌症的发生和发展中的关键作用,并且SHTN1可能与FGFR基因相互作用。然而,其在BLCA中的具体功能仍不清楚。

材料和方法

我们使用来自癌症基因组图谱(TCGA)的433个BLCA样本,研究了SHTN1表达与多种恶性肿瘤的预后、免疫浸润和肿瘤微环境(TME)之间的关联。通过使用R包对SHTN1相关基因进行差异基因表达分析、基于基因本体论(GO)、京都基因与基因组百科全书(KEGG)的功能注释以及基因集富集分析(GSEA)。使用R包分析免疫反应和TME评分以及SHTN1的药物敏感性概况。进行免疫组织化学(IHC)和蛋白质印迹法以评估BLCA患者手术标本中SHTN1的表达。进行CCK8测定和细胞伤口愈合测定。通过R软件进行生物信息学分析。使用非配对t检验评估显著差异。

结果

与预后不良相关的BLCA中SHTN1表达水平显著升高(p < 0.01)。受试者工作特征(ROC)曲线和列线图证明了SHTN1在BLCA中的诊断和预后效能。值得注意的是,高级别BLCA中SHTN1表达高于低级别(p = 5.6e - 10),免疫组织化学和蛋白质印迹法证实了这一发现。通路富集分析显示神经活性配体 - 受体相互作用和化学致癌作用 - DNA加合物信号通路在SHTN1差异表达基因中显著富集。在免疫浸润方面,SHTN1低表达组中主要是CD8 T细胞、滤泡辅助性T细胞和树突状细胞,而高表达组中主要是M0和M2巨噬细胞以及肥大细胞。多变量Cox回归分析确定SHTN1是总生存期的独立预后因素(HR = 2.93;95% CI = 1.40 - 6.13;p = 0.004)。CCK8和伤口愈合实验表明,SHTN1敲低降低了细胞增殖和迁移。蛋白质印迹显示EMT通路与SHTN1明显相关。

结论

我们的研究结果表明,SHTN1有望成为BLCA的预后和诊断生物标志物。此外,它与BLCA中免疫浸润增加和肿瘤微环境的独特特征密切相关

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