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4-羟基-L-脯氨酸异构体对无鸟氨酸短杆菌肽S构象的褶皱效应

Puckering effects of 4-hy-droxy-l-proline isomers on the conformation of ornithine-free Gramicidin S.

作者信息

Asano Akiko, Nakayama Kanako, Okada Sakura, Kato Takuma, Doi Mitsunobu

机构信息

Osaka Medical and Pharmaceutical University, 4-20-1 Nasahara, Takatsuki, Osaka 590-1094, Japan.

出版信息

Acta Crystallogr E Crystallogr Commun. 2024 Aug 9;80(Pt 9):942-946. doi: 10.1107/S2056989024007771. eCollection 2024 Sep 1.

Abstract

The cyclic peptide (Val-Leu-Leu-d-Phe-Pro) (peptide ) was specifically designed for structural chemistry investigations, drawing inspiration from Gramicidin S (GS). Previous studies have shown that Pro residues within adopt a down-puckering conformation of the pyrrolidine ring. By incorporating fluoride-Pro with 4-/-isomers into , an up-puckering conformation was successfully induced. In the current investigation, introducing hy-droxy-prolines with 4-/-isomer configurations (tHyp/cHyp) into gave (Val-Leu-Leu-d-Phe-tHyp) methanol disolvate monohydrate, CHNO·2CHO·HO (), and (Val-Leu-Leu-d-Phe-cHyp) monohydrate, CHNO·HO (), respectively. However, the puckering of and remained in the down conformation, regardless of the geometric position of the hydroxyl group. Although the backbone structure of with -substitution was asymmetric, the asymmetric backbone of with -substitution was unexpected. It is speculated that the anti-cipated influence of stress from the geometric positioning, which was expected to affect the puckering, may have been mitigated by inter-actions between the hydroxyl groups of hy-droxy-proline, the solvent mol-ecules, and peptides.

摘要

环肽(Val-Leu-Leu-d-Phe-Pro)(肽 )是专门为结构化学研究设计的,灵感来源于短杆菌肽S(GS)。先前的研究表明, 中的Pro残基采用吡咯烷环的下皱构象。通过将具有4 - / - 异构体的氟代-Pro引入 ,成功诱导了上皱构象。在当前研究中,将具有4 - / - 异构体构型(tHyp/cHyp)的羟基脯氨酸引入 分别得到了甲醇溶剂化物一水合物(Val-Leu-Leu-d-Phe-tHyp),CHNO·2CHO·HO( )和一水合物(Val-Leu-Leu-d-Phe-cHyp),CHNO·HO( )。然而,无论羟基的几何位置如何, 和 的皱折仍保持在下构象。尽管具有 - 取代的 的主链结构是不对称的,但具有 - 取代的 的不对称主链是出乎意料的。据推测,预期会影响皱折的几何定位应力的预期影响可能已通过羟基脯氨酸的羟基、溶剂分子和肽之间的相互作用得到缓解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13cf/11389682/94786ff78a56/e-80-00942-fig1.jpg

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