Faris Israa Faris M, Ibrahim Noon, Zeanelabdeen Tomador S, Alfaki Mohamed
Faculty of Veterinary Medicine, University of Khartoum, Khartoum, SDN.
Department of Fertilization and Artificial Insemination, Istanbul University-Cerrahpasa, Istanbul, TUR.
Cureus. 2024 Aug 12;16(8):e66743. doi: 10.7759/cureus.66743. eCollection 2024 Aug.
Vitamin D receptor (VDR), specifically the 1,25-dihydroxy form, holds significant importance in various types of cancer, including cervical squamous cell carcinoma (CESC), which poses a significant public health challenge. A pan-cancer analysis was conducted on VDR in CESC, with a focus on its expression and relationship with immune infiltration and genetic alterations. Bioinformatics databases, including TIMER, GEPIA, UALCAN, cBioportal, and Kaplan-Meier Plotter, have been utilized. VDR expression in CESC has been validated using publicly available data. Results were significantly upregulated (P=0.05) in THCA, BRCA, KICH, LUAD, LIHC, STAD, UCEC, CESC, CHOL, ESCA, and HNSC samples. We analyzed the correlation between VDR expression and various clinicopathological factors such as age, race, and cancer stage. VDR expression was significantly upregulated across all age groups, with the highest levels observed in older adults followed by young and middle-aged adults. VDR gene expression was significantly elevated across all races, including Caucasians, African-Americans, and Asians, compared to that in the normal group. Furthermore, VDR expression was significantly upregulated in cancer stages 1, 2, 3, and 4, with the highest increase observed in stage 3 compared to that in normal individuals. We analyzed the expression of the VDR in relation to immune cell type and tumor cell purity in CESC. Our results indicated that VDR expression was positively correlated with neutrophils and dendritic cells and negatively correlated with tumor cell purity in CESC patients. There was no significant correlation between VDR expression and the abundance of B cells, CD8+ T cells, CD4+ T cells, and macrophages. Our study found no significant effect of VDR expression on patient prognosis, although it was positively correlated with CD4+ T cells. The Cox proportional hazards model indicated that age and immune cells did not significantly affect prognosis. Most VDR mutations are concentrated in diffuse large B-cell lymphoma, with an amplification frequency of 4% and a deep deletion frequency of 2.2%. GEO confirmed VDR expression in CESC, identifying 1515 upregulated and 1877 downregulated genes, with volcano plots showing CESC downregulation in patients.
维生素D受体(VDR),特别是1,25 - 二羟基形式,在包括宫颈鳞状细胞癌(CESC)在内的各种癌症中具有重要意义,而宫颈鳞状细胞癌是一项重大的公共卫生挑战。对CESC中的VDR进行了泛癌分析,重点关注其表达以及与免疫浸润和基因改变的关系。使用了包括TIMER、GEPIA、UALCAN、cBioportal和Kaplan - Meier Plotter在内的生物信息学数据库。利用公开可用数据验证了CESC中VDR的表达。结果显示,在甲状腺癌(THCA)、乳腺癌(BRCA)、肾嫌色细胞癌(KICH)、肺腺癌(LUAD)、肝内胆管癌(LIHC)、胃癌(STAD)、子宫内膜癌(UCEC)、CESC、胆管癌(CHOL)、食管癌(ESCA)和头颈部鳞状细胞癌(HNSC)样本中显著上调(P = 0.05)。我们分析了VDR表达与年龄、种族和癌症分期等各种临床病理因素之间的相关性。VDR表达在所有年龄组中均显著上调,在老年人中观察到的水平最高,其次是年轻人和中年人。与正常组相比,在所有种族(包括白种人、非裔美国人和亚洲人)中VDR基因表达均显著升高。此外,VDR表达在癌症1期、2期、3期和4期均显著上调,与正常个体相比,在3期观察到的增加最为明显。我们分析了CESC中VDR与免疫细胞类型和肿瘤细胞纯度相关的表达情况。我们的结果表明,CESC患者中VDR表达与中性粒细胞和树突状细胞呈正相关,与肿瘤细胞纯度呈负相关。VDR表达与B细胞、CD8 + T细胞、CD4 + T细胞和巨噬细胞的丰度之间无显著相关性。我们的研究发现VDR表达对患者预后无显著影响,尽管它与CD4 + T细胞呈正相关。Cox比例风险模型表明年龄和免疫细胞对预后无显著影响。大多数VDR突变集中在弥漫性大B细胞淋巴瘤中,扩增频率为4%,深度缺失频率为2.2%。基因表达综合数据库(GEO)证实了CESC中VDR的表达,鉴定出1515个上调基因和1877个下调基因,火山图显示CESC患者中基因下调。