Department of Agroecology and Crop Production, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcká 129, Suchdol, 16500 Prague, Czech Republic.
Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati 781039, India.
Int J Mol Sci. 2024 Sep 6;25(17):9650. doi: 10.3390/ijms25179650.
infections present a significant threat to the global healthcare system. The increasing resistance to existing antibiotics and their limited efficacy underscores the urgent need to identify new antibacterial agents with low toxicity to effectively combat various infections. Hence, in this study, we have screened T-muurolol for possible interactions with several -specific bacterial proteins to establish its potential as an alternative antibacterial agent. Based on its binding affinity and interactions with amino acids, T-muurolol was identified as a potential inhibitor of lipase, dihydrofolate reductase, penicillin-binding protein 2a, D-Ala:D-Ala ligase, and ribosome protection proteins tetracycline resistance determinant (RPP TetM), which indicates its potentiality against and its multi-drug-resistant strains. Also, T-muurolol exhibited good antioxidant and anti-inflammatory activity by showing strong binding interactions with flavin adenine dinucleotide (FAD)-dependent nicotinamide adenine dinucleotide phosphate (NAD(P)H) oxidase, and cyclooxygenase-2. Consequently, molecular dynamics (MD) simulation and recalculating binding free energies elucidated its binding interaction stability with targeted proteins. Furthermore, quantum chemical structure analysis based on density functional theory (DFT) depicted a higher energy gap between the highest occupied molecular orbital and lowest unoccupied molecular orbital (E) with a lower chemical potential index, and moderate electrophilicity suggests its chemical hardness and stability and less polarizability and reactivity. Additionally, pharmacological parameters based on ADMET, Lipinski's rules, and bioactivity score validated it as a promising drug candidate with high activity toward ion channel modulators, nuclear receptor ligands, and enzyme inhibitors. In conclusion, the current findings suggest T-muurolol as a promising alternative antibacterial agent that might be a potential phytochemical-based drug against . This study also suggests further clinical research before human application.
感染对全球医疗保健系统构成了重大威胁。现有抗生素的耐药性不断增加,其疗效有限,这突显出迫切需要寻找具有低毒性的新型抗菌剂,以有效对抗各种感染。因此,在本研究中,我们筛选了 T-muurolol 与几种特定细菌蛋白的相互作用,以确定其作为替代抗菌剂的潜力。基于其结合亲和力和与氨基酸的相互作用,T-muurolol 被鉴定为脂肪酶、二氢叶酸还原酶、青霉素结合蛋白 2a、D-Ala:D-Ala 连接酶和核糖体保护蛋白四环素抗性决定因子(RPP TetM)的潜在抑制剂,这表明其对 及其多药耐药株具有潜力。此外,T-muurolol 通过与黄素腺嘌呤二核苷酸(FAD)依赖性烟酰胺腺嘌呤二核苷酸磷酸(NAD(P)H)氧化酶和环氧化酶-2 表现出强烈的结合相互作用,显示出良好的抗氧化和抗炎活性。因此,分子动力学(MD)模拟和重新计算结合自由能阐明了其与靶蛋白的结合相互作用稳定性。此外,基于密度泛函理论(DFT)的量子化学结构分析描绘了最高占据分子轨道和最低未占据分子轨道(E)之间的更高能隙,以及较低的化学势指数和中等的电亲性,表明其化学硬度和稳定性以及较低的极化率和反应性。此外,基于 ADMET、Lipinski 规则和生物活性评分的药理学参数验证了它作为一种有前途的候选药物,对离子通道调节剂、核受体配体和酶抑制剂具有高活性。总之,目前的研究结果表明,T-muurolol 是一种有前途的替代抗菌剂,可能是一种基于植物化学物质的潜在药物,可用于治疗 。本研究还建议在人类应用前进行进一步的临床研究。