Laboratory of Animal Histology, Faculty of Biology, "Alexandru Ioan Cuza" University of Iași, Carol I bvd. 20A, 700505 Iasi, Romania.
Biochemistry & Proteomics Laboratories, Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810, USA.
Molecules. 2024 Sep 2;29(17):4156. doi: 10.3390/molecules29174156.
Proteins are the most common types of biomarkers used in breast cancer (BC) theranostics and management. By definition, a biomarker must be a relevant, objective, stable, and quantifiable biomolecule or other parameter, but proteins are known to exhibit the most variate and profound structural and functional variation. Thus, the proteome is highly dynamic and permanently reshaped and readapted, according to changing microenvironments, to maintain the local cell and tissue homeostasis. It is known that protein posttranslational modifications (PTMs) can affect all aspects of protein function. In this review, we focused our analysis on the different types of PTMs of histological biomarkers in BC. Thus, we analyzed the most common PTMs, including phosphorylation, acetylation, methylation, ubiquitination, SUMOylation, neddylation, palmitoylation, myristoylation, and glycosylation/sialylation/fucosylation of transcription factors, proliferation marker Ki-67, plasma membrane proteins, and histone modifications. Most of these PTMs occur in the presence of cellular stress. We emphasized that these PTMs interfere with these biomarkers maintenance, turnover and lifespan, nuclear or subcellular localization, structure and function, stabilization or inactivation, initiation or silencing of genomic and non-genomic pathways, including transcriptional activities or signaling pathways, mitosis, proteostasis, cell-cell and cell-extracellular matrix (ECM) interactions, membrane trafficking, and PPIs. Moreover, PTMs of these biomarkers orchestrate all hallmark pathways that are dysregulated in BC, playing both pro- and/or antitumoral and context-specific roles in DNA damage, repair and genomic stability, inactivation/activation of tumor-suppressor genes and oncogenes, phenotypic plasticity, epigenetic regulation of gene expression and non-mutational reprogramming, proliferative signaling, endocytosis, cell death, dysregulated TME, invasion and metastasis, including epithelial-mesenchymal/mesenchymal-epithelial transition (EMT/MET), and resistance to therapy or reversal of multidrug therapy resistance. PTMs occur in the nucleus but also at the plasma membrane and cytoplasmic level and induce biomarker translocation with opposite effects. Analysis of protein PTMs allows for the discovery and validation of new biomarkers in BC, mainly for early diagnosis, like extracellular vesicle glycosylation, which may be considered as a potential source of circulating cancer biomarkers.
蛋白质是乳腺癌(BC)治疗和管理中最常用的生物标志物类型。根据定义,生物标志物必须是相关的、客观的、稳定的和可量化的生物分子或其他参数,但众所周知,蛋白质表现出最多变和最深刻的结构和功能变化。因此,蛋白质组具有高度的动态性,根据不断变化的微环境,不断重塑和重新适应,以维持局部细胞和组织的内稳态。已知蛋白质翻译后修饰(PTM)可以影响蛋白质功能的各个方面。在这篇综述中,我们将分析重点放在 BC 中组织学生物标志物的不同类型的 PTM 上。因此,我们分析了最常见的 PTM,包括磷酸化、乙酰化、甲基化、泛素化、SUMO 化、类泛素化、棕榈酰化、豆蔻酰化、糖基化/唾液酸化/岩藻糖化、转录因子、增殖标志物 Ki-67、质膜蛋白和组蛋白修饰。这些 PTM 中的大多数发生在细胞应激存在的情况下。我们强调,这些 PTM 会干扰这些生物标志物的维持、周转和寿命、核或亚细胞定位、结构和功能、稳定性或失活、基因组和非基因组途径的启动或沉默,包括转录活性或信号通路、有丝分裂、蛋白质稳态、细胞-细胞和细胞-细胞外基质(ECM)相互作用、膜运输和蛋白质-蛋白质相互作用。此外,这些生物标志物的 PTM 协调了在 BC 中失调的所有标志性途径,在 DNA 损伤、修复和基因组稳定性、肿瘤抑制基因和癌基因的失活/激活、表型可塑性、基因表达的表观遗传调控和非突变重编程、增殖信号、内吞作用、细胞死亡、失调的 TME、侵袭和转移,包括上皮-间充质/间充质-上皮转化(EMT/MET),以及对治疗的耐药性或多药耐药性的逆转方面,发挥着促癌和/或抑癌作用,并且具有特定的作用。PTM 不仅发生在核内,也发生在质膜和细胞质水平,并诱导生物标志物的转位,产生相反的效果。分析蛋白质 PTM 可以发现和验证 BC 中的新生物标志物,主要用于早期诊断,如细胞外囊泡糖基化,可作为循环肿瘤生物标志物的潜在来源。