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印度患者子宫内膜癌的微小RNA谱——预后潜在生物标志物的鉴定

microRNA profile of endometrial cancer from Indian patients-identification of potential biomarkers for prognosis.

作者信息

Hegde Shraddha, Wagh Kalpesh, Narayana Suma Mysore, Abikar Apoorva, Nambiar Sughosha, Ananthamurthy Shriraksha, Narayana Navyashree Hosahalli, Reddihalli Pallavi Venkateshaiah, Chandraiah Savitha, Ranganathan Prathibha

机构信息

Centre for Human Genetics, Bengaluru, India.

Kidwai Memorial Institute of Oncology, Bengaluru, India.

出版信息

Biochem Biophys Rep. 2024 Aug 25;39:101812. doi: 10.1016/j.bbrep.2024.101812. eCollection 2024 Sep.

Abstract

Endometrial cancer is one of the major cancers in women throughout the world. If diagnosed early, these cancers are treatable and the prognosis is usually good. However, one major problem in treating endometrial cancer is accurate diagnosis and staging. Till date, the choice method for diagnosis and staging is histopathology. Although there are few molecular markers identified, they are not always sufficient in making accurate diagnosis and deciding on therapeutic strategy. As a result, very often patients are under treated or over treated. In this study, our group has profiled microRNAs from Indian patients using NGS-based approach. We have identified 212 differentially expressed microRNAs in endometrial cancer. Among these, there are 17 novel miRNAs. Since this data represents only Indian cohort and also lacks survival data, validation across other populations is necessary before being considered as biomarkers. As one approach towards this, these microRNAs have also been compared to data from TCGA, which represent other populations and also correlated to relevance in overall survival. Using approaches, mRNA targets of the miRNAs have been predicted. After comparing with TCGA, we have identified 16 miRNA-mRNA pairs which could be potential prognostic biomarkers for endometrial cancer. This is the first miRNA profiling report from Indian cohort and one of the very few studies which have identified potential biomarkers of prognosis in endometrial cancer.

摘要

子宫内膜癌是全球女性主要的癌症之一。如果早期诊断,这些癌症是可治疗的,且预后通常良好。然而,治疗子宫内膜癌的一个主要问题是准确诊断和分期。迄今为止,诊断和分期的选择方法是组织病理学。尽管已鉴定出一些分子标志物,但它们在进行准确诊断和确定治疗策略时并不总是足够的。因此,患者常常接受过度治疗或治疗不足。在本研究中,我们团队使用基于二代测序(NGS)的方法对印度患者的微小RNA进行了分析。我们在子宫内膜癌中鉴定出212个差异表达的微小RNA。其中,有17个是新的微小RNA。由于该数据仅代表印度队列且缺乏生存数据,在被视为生物标志物之前,有必要在其他人群中进行验证。作为实现这一目标的一种方法,这些微小RNA也已与代表其他人群的癌症基因组图谱(TCGA)数据进行了比较,并与总生存相关性进行了关联。通过这些方法,已预测出这些微小RNA的信使核糖核酸(mRNA)靶标。与TCGA比较后,我们鉴定出16对微小RNA-信使核糖核酸对,它们可能是子宫内膜癌潜在的预后生物标志物。这是来自印度队列的首份微小RNA分析报告,也是为数不多的已鉴定出子宫内膜癌预后潜在生物标志物的研究之一。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c0d9/11395764/838188255ad0/gr1.jpg

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