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参与胆囊炎性病变进展为浸润性癌过程的分子生物标志物:蛋白质组学方法。

Molecular biomarkers involved in the progression of gallbladder inflammatory lesions to invasive cancer: A proteomic approach.

作者信息

Rawal Neetu, Hariprasad Gururao, Bandyopadhyay Sabyasachi, Ranjan Dash Nihar, Kumar Sunil, Das Prasenjit, Dey Sharmistha, Ahmad Khan Maroof, Ranjan Amar, Chopra Anita, Saluja Sundeep, Hussain Showket, Rath G K, Kaur Tanvir, Tanwar Pranay

机构信息

Laboratory Oncology Unit, Dr. B.R.A. Institute Rotary Cancer Hospital, All India Institute of Medical Sciences, New Delhi, India.

Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India.

出版信息

Biomol Biomed. 2024 Dec 11;25(1):115-143. doi: 10.17305/bb.2024.10704.

Abstract

The progression of gallbladder inflammatory lesions to invasive cancer remains poorly understood, necessitating research on biomarkers involved in this transition. This study aims to identify and validate proteins associated with this progression, offering insights into potential diagnostic biomarkers for gallbladder cancer (GBC). Label-free liquid chromatography-assisted tandem mass spectrometry (LC-MS/MS) proteomics was performed on samples from ten cases each of GBC and inflammatory lesions, with technical duplicates. Validation was conducted through the enzyme-linked immunosorbent assay (ELISA) using 80 samples (40 GBC and 40 inflammatory lesions). Bioinformatics tools analyzed protein-protein interaction (PPI) networks and pathways. Statistical correlations with clinicopathological variables were assessed. Prognostic evaluation utilized Kaplan-Meier survival analysis and Cox regression analyses. mRNA expressions were studied using real-time-polymerase chain reaction (RT-PCR). Out of 5714 proteins analyzed, 621 were differentially expressed. Three upregulated (the S100 calcium-binding protein P [S100P], polymeric immunoglobulin receptor [PIGR], and complement C1q-binding protein [C1QBP]) and two downregulated (transgelin [TAGLN] and calponin 1 [CNN1]) proteins showed significant expression. Pathway analysis implicated involvement of proteoglycans in cancer and glycosaminoglycan metabolism. Significant correlations were observed between protein concentrations and clinicopathological variables. Prognostic factors, such as tumor size, lymph node metastasis, and preoperative bilirubin levels were associated with overall survival (OS). Protein-based assays demonstrated higher resolution compared to mRNA analysis, suggesting their utility in GBC risk stratification. S100P, PIGR, C1QBP, TAGLN, and CNN1 emerge as potential protein-based biomarkers involved in the progression from gallbladder inflammatory lesions to invasive cancer. These findings hold promise for improved diagnostic and prognostic strategies in GBC management.

摘要

胆囊炎性病变向浸润性癌的进展仍知之甚少,因此有必要对参与这一转变的生物标志物进行研究。本研究旨在识别和验证与这一进展相关的蛋白质,为胆囊癌(GBC)的潜在诊断生物标志物提供见解。对10例GBC和炎性病变样本进行了无标记液相色谱辅助串联质谱(LC-MS/MS)蛋白质组学分析,并进行了技术重复。通过酶联免疫吸附测定(ELISA)对80个样本(40例GBC和40例炎性病变)进行验证。生物信息学工具分析了蛋白质-蛋白质相互作用(PPI)网络和通路。评估了与临床病理变量的统计相关性。预后评估采用Kaplan-Meier生存分析和Cox回归分析。使用实时聚合酶链反应(RT-PCR)研究mRNA表达。在分析的5714种蛋白质中,有621种差异表达。三种上调蛋白(S100钙结合蛋白P[S100P]、多聚免疫球蛋白受体[PIGR]和补体C1q结合蛋白[C1QBP])和两种下调蛋白(转胶蛋白[TAGLN]和钙调蛋白1[CNN1])表现出显著表达。通路分析表明蛋白聚糖参与癌症和糖胺聚糖代谢。观察到蛋白质浓度与临床病理变量之间存在显著相关性。肿瘤大小、淋巴结转移和术前胆红素水平等预后因素与总生存期(OS)相关。基于蛋白质的检测方法比mRNA分析具有更高的分辨率,表明它们在GBC风险分层中的实用性。S100P、PIGR、C1QBP、TAGLN和CNN1成为从胆囊炎性病变向浸润性癌进展过程中潜在的基于蛋白质的生物标志物。这些发现为改善GBC管理中的诊断和预后策略带来了希望。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f967/11647257/3b1226e53dc0/bb-2024-10704f1.jpg

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