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潜在入侵性萤火虫 Photinus signaticollis Blanchard 1845 的基因组学研究:完整的线粒体基因组、多基因系统发育以及荧光素酶和荧光素再生基因的获得。

Genomics investigation of the potentially invasive firefly Photinus signaticollis Blanchard 1845: Complete mitochondrial genome, multigene phylogenies and obtention of the luciferase and luciferin-regenerating genes.

机构信息

LABOCEA R&D - CNRS, 120 Avenue Alexis de Rochon, 29280, Plouzané, France.

Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland.

出版信息

Arthropod Struct Dev. 2024 Sep;82:101384. doi: 10.1016/j.asd.2024.101384. Epub 2024 Sep 17.

DOI:10.1016/j.asd.2024.101384
PMID:39288692
Abstract

A genomic investigation of the potentially invasive firefly Photinus signaticollis Blanchard1845 has been performed and led to the obtention of its complete 16,411 bp long mitochondrial genome. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes and 2 rRNA genes. With other species of the Photinus complex it shares several premature terminations of some protein-coding genes and also an overlap between cox1 and tRNA-Tyr. By data-mining, the complete luciferase and luciferin-regenerating genes were also identified from the contigs file and compared with existing data, in addition to WG and CAD, two genes used in pioneering phylogenetic studies on fireflies. Three maximum likelihood phylogenies were derived from all these data. The multigene phylogeny based on all mitochondrial protein-coding genes strongly associates P. signaticollis with Photinus pyralis Linnaeus, 1758 and the lantern-less daily "winter firefly", Photinus corruscus Linnaeus, 1767. A second phylogeny based on concatenated sequences of the cox1, WG and CAD genes positions P. signaticollis as a sister clade to a large cluster of species containing the 7 sub-groups previously evidenced among the North American species of the Photinus complex. A third phylogeny based on the amino-acid sequence of the luciferase protein associates P. signaticollis to Photinus scintillans. The analysis presented here will most certainly help to come to a better understanding of the very complex inter-relationships in the very large Photinus genus.

摘要

对潜在入侵性萤火虫 Photinus signaticollis Blanchard1845 进行了全基因组研究,获得了其完整的 16411 个碱基对的线粒体基因组。该线粒体基因组编码 13 个蛋白质编码基因、22 个 tRNA 基因和 2 个 rRNA 基因。与 Photinus 复合体的其他物种一样,它共享一些蛋白质编码基因的提前终止和 cox1 与 tRNA-Tyr 之间的重叠。通过数据挖掘,还从 contigs 文件中鉴定出了完整的荧光素酶和荧光素再生基因,并与现有数据进行了比较,此外还有在萤火虫系统发育研究中使用的 WG 和 CAD 基因。从所有这些数据中得出了三个最大似然系统发育树。基于所有线粒体蛋白质编码基因的多基因系统发育树强烈地将 P. signaticollis 与 Photinus pyralis Linnaeus, 1758 和无灯笼的日常“冬萤” Photinus corruscus Linnaeus, 1767 联系在一起。第二个基于 cox1、WG 和 CAD 基因串联序列的系统发育树将 P. signaticollis 置于一个姐妹分支中,该分支包含了北美 Photinus 复合体物种中先前证实的 7 个亚群。基于荧光素酶蛋白的氨基酸序列的第三个系统发育树将 P. signaticollis 与 Photinus scintillans 联系在一起。本文提出的分析将有助于更好地理解 Photinus 这一非常庞大的属中非常复杂的相互关系。

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