University of Groningen and University Medical Center Groningen, Department of Biomaterials & Biomedical Technology, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.
Institute of Functional Nano and Soft Materials, Jiangsu Key Laboratory for Carbon-Based Functional Materials and Devices, Joint International Research Laboratory of Carbon-Based Functional Materials and Devices, Soochow University, 199 Ren'ai Rd, Suzhou, 215123, Jiangsu, P. R. China.
NPJ Biofilms Microbiomes. 2024 Sep 17;10(1):87. doi: 10.1038/s41522-024-00559-9.
Bacteria can be dead, alive, or exhibit slowed or suspended life forms, making bacterial death difficult to establish. Here, agar-plating, microscopic-counting, SYTO9/propidium-iodide staining, MTT-conversion, and bioluminescence-imaging were used to determine bacterial death upon exposure to different conditions. Rank correlations between pairs of assay outcomes were low, indicating different assays measure different aspects of bacterial death. Principal-component analysis yielded two principal components, named "reproductive-ability" (PC1) and "metabolic-activity" (PC2). Plotting of these principal components in two-dimensional space revealed a dead region, with borders defined by the PC1 and PC2 values. Sensu stricto implies an unpractical reality that all assays determining PC1 and PC2 must be carried out in order to establish bacterial death. Considering this unpracticality, it is suggested that at least one assay determining reproductive activity (PC1) and one assay determining metabolic activity (PC2) should be used to establish bacterial death. Minimally, researchers should specifically describe which dimension of bacterial death is assessed, when addressing bacterial death.
细菌可能是死亡的、存活的,或者表现出减缓或暂停的生命形式,这使得细菌的死亡难以确定。在这里,使用琼脂平板培养、显微镜计数、SYTO9/碘化丙啶染色、MTT 转化和生物发光成像来确定细菌在暴露于不同条件下的死亡情况。对不同检测结果之间的等级相关性进行分析,结果表明不同的检测方法测量了细菌死亡的不同方面。主成分分析得到了两个主成分,分别命名为“繁殖能力”(PC1)和“代谢活性”(PC2)。将这些主成分绘制在二维空间中,揭示了一个死亡区域,其边界由 PC1 和 PC2 的值定义。严格意义上的含义是一种不切实际的现实,即确定 PC1 和 PC2 的所有检测都必须进行,才能确定细菌的死亡。考虑到这种不切实际性,建议至少使用一种确定繁殖活性(PC1)的检测方法和一种确定代谢活性(PC2)的检测方法来确定细菌的死亡。至少,研究人员在讨论细菌死亡时,应具体说明评估细菌死亡的哪个维度。