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利用 MALDI-MS 毒液蛋白质组指纹图谱和计算建模对摩洛哥蝎子进行分类鉴定。

Taxonomic identification of Morocco scorpions using MALDI-MS fingerprints of venom proteomes and computational modeling.

机构信息

Laboratory of Microbial Biotechnology and Plant Protection, Faculty of Sciences, University of Ibn Zohr, Agadir, Morocco; Institute for Advanced Biosciences, CR Inserm U1209, CNRSUMR 5309, University of Grenoble-Alpes, 38000 Grenoble, France; Platform BioPark Archamps, 74160 Archamps, France.

Laboratory of Biotechnology and Valorization of Natural Resources, Faculty of Sciences, Ibn Zohr University, Agadir, Morocco.

出版信息

J Proteomics. 2025 Jan 6;310:105321. doi: 10.1016/j.jprot.2024.105321. Epub 2024 Sep 19.

DOI:10.1016/j.jprot.2024.105321
PMID:39304032
Abstract

The venom of scorpions has been the subject of numerous studies. However, their taxonomic identification is not a simple task, leading to misidentifications. This study aims to provide a practical approach for identifying scorpions based on the venom molecular mass fingerprint (MFP). Specimens (251) belonging to fifteen species were collected from different regions in Morocco. Their MFPs were acquired using MALDI-MS. These were used as a training dataset to generate predictive models and a library of mean spectral profiles using software programs based on machine learning. The computational model achieved an overall recognition capability of 99 % comprising 32 molecular signatures. The models and the library were tested using a new dataset for external validation and to evaluate their capability of identification. We recorded an accuracy classification with an average of 97 % and 98 % for the computational models and the library, respectively. To our knowledge, this is the first attempt to demonstrate the potential of MALDI-MS and MFPs to generate predictive models capable of discriminating scorpions from family to species levels, and to build a library of species-specific spectra. These promising results may represent a proof of concept towards developing a reliable approach for rapid molecular identification of scorpions in Morocco. SIGNIFICANCE OF THE STUDY: With their clinical importance, scorpions may constitute a desirable study model for many researchers. The first step in studying scorpion is systematically identifying the species of interest. However, it can be a difficult task, especially for the non-experts. The taxonomy of scorpions is primarily based on morphometric characters. In Morocco, the high number of species and subspecies mainly endemic, and the morphological similarities between different species may result in false identifications. This was observed in many reports according to the scorpion experts. In this study, we describe a reliable practical approach for identifying scorpions based on the venom molecular mass fingerprints (MFPs). By using two software programs based on machine learning, we have demonstrated that these MFPs contains sufficient inter-specific variation to differentiate between the scorpion species mentioned in this study with a good accuracy. Using a drop of venom, this new approach could be a rapid, accurate and cost saving method for taxonomic identification of scorpions in Morocco.

摘要

蝎子的毒液一直是众多研究的主题。然而,对它们进行分类鉴定并不是一件简单的事情,这导致了鉴定错误。本研究旨在提供一种基于毒液分子质量指纹图谱(MFP)识别蝎子的实用方法。从摩洛哥不同地区采集了 15 个物种的 251 个标本。使用 MALDI-MS 获得它们的 MFP。这些被用作训练数据集,以使用基于机器学习的软件程序生成预测模型和平均光谱特征库。计算模型的整体识别能力为 99%,包含 32 个分子特征。使用新数据集对模型和库进行了外部验证和鉴定能力测试。我们记录了平均准确率为 97%和 98%的分类准确率,分别用于计算模型和库。据我们所知,这是首次尝试证明 MALDI-MS 和 MFP 具有生成能够区分科到种水平的蝎子的预测模型以及构建物种特异性光谱库的潜力。研究的意义:由于蝎子的临床重要性,它们可能成为许多研究人员的理想研究模型。研究蝎子的第一步是系统地识别感兴趣的物种。然而,这可能是一项艰巨的任务,尤其是对于非专家来说。蝎子的分类主要基于形态特征。在摩洛哥,由于物种和亚种数量众多,主要是地方性的,以及不同物种之间的形态相似性,可能导致错误的鉴定。这是根据蝎子专家的许多报告观察到的。在这项研究中,我们描述了一种基于毒液分子质量指纹图谱(MFP)识别蝎子的可靠实用方法。通过使用基于机器学习的两种软件程序,我们证明了这些 MFP 包含足够的种间变异,可以很好地准确区分本研究中提到的蝎子物种。使用一滴毒液,这种新方法可能是一种快速、准确和节省成本的摩洛哥蝎子分类鉴定方法。

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