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发现针对造血前列腺素 D2 合酶的潜在哮喘治疗药物:一种综合计算方法。

Discovering potential asthma therapeutics targeting hematopoietic prostaglandin D2 synthase: An integrated computational approach.

机构信息

Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, King Saud University, Riyadh, 11433, Saudi Arabia.

出版信息

Arch Biochem Biophys. 2024 Nov;761:110157. doi: 10.1016/j.abb.2024.110157. Epub 2024 Sep 20.

Abstract

Allergic asthma, a chronic inflammatory illness that affects millions worldwide, has serious economic and health consequences. Despite advances in therapy, contemporary treatments have poor efficacy and negative effects. This study investigates hematopoietic prostaglandin D2 synthase (HPGDS) as a potential target for novel asthma therapies. Targeting HPGDS may provide innovative treatment methods. A library of phytochemicals was used to find putative HPGDS inhibitors by structure-based and ligand-based virtual screening. Among the 2295 compounds screened, four compounds (ZINC208828240, ZINC95627530, ZINC14727536, and ZINC14711790) demonstrated strong binding affinities of -10.4, -10.3, -9.2, -9.1 kcal/mol respectively with key residues, suggesting their potential as a highly effective HPGDS inhibitor. Molecular dynamics (MD) simulations and Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) computations were further performed to evaluate the stability and binding affinity of the complexes. MD simulations and MMPBSA confirmed that compound ZINC14711790 showed high stability and binding affinity (binding energy -31.52 kcal/mol) than other compounds, including HQL-79, suggesting that this compound might be used as promising inhibitors to treat asthma. RMSD and RMSF analysis also revealed that ZINC14711790 exhibited strong dynamic stability. The findings of this study show the efficacy of ZINC14711790 as HPGDS inhibitors with high binding affinity, dynamic stability, and appropriate ADMET profile.

摘要

过敏性哮喘是一种影响全球数百万人的慢性炎症性疾病,具有严重的经济和健康后果。尽管在治疗方面取得了进展,但现代治疗方法的疗效不佳,且有副作用。本研究探讨了造血前列腺素 D2 合酶(HPGDS)作为新型哮喘治疗靶点的可能性。靶向 HPGDS 可能提供创新的治疗方法。本研究通过基于结构和基于配体的虚拟筛选,使用植物化学物质文库寻找潜在的 HPGDS 抑制剂。在筛选的 2295 种化合物中,有 4 种化合物(ZINC208828240、ZINC95627530、ZINC14727536 和 ZINC14711790)与关键残基的结合亲和力分别为-10.4、-10.3、-9.2 和-9.1 kcal/mol,表明它们具有成为高效 HPGDS 抑制剂的潜力。进一步进行了分子动力学(MD)模拟和分子力学 Poisson-Boltzmann 表面面积(MMPBSA)计算,以评估复合物的稳定性和结合亲和力。MD 模拟和 MMPBSA 证实,化合物 ZINC14711790 比其他化合物(包括 HQL-79)表现出更高的稳定性和结合亲和力(结合能-31.52 kcal/mol),表明该化合物可能被用作治疗哮喘的有前途的抑制剂。RMSD 和 RMSF 分析还表明,ZINC14711790 表现出较强的动态稳定性。本研究结果表明,ZINC14711790 作为 HPGDS 抑制剂具有高结合亲和力、动态稳定性和适当的 ADMET 特征。

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