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提高木质素过氧化物酶的热稳定性:血红素作为驱动血红素酶稳定性变化的关键辅因子。

Enhancing the thermostability of lignin peroxidase: Heme as a keystone cofactor driving stability changes in heme enzymes.

作者信息

Park Joo Yeong, Han Seunghyun, Kim Doa, Nguyen Trang Vu Thien, Nam Youhyun, Kim Suk Min, Chang Rakwoo, Kim Yong Hwan

机构信息

School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), 50, UNIST-gil, Ulsan, 44919, Republic of Korea.

Department of Applied Chemistry, University of Seoul, 163, Seoulsiripdae-ro, Seoul, 02504, Republic of Korea.

出版信息

Heliyon. 2024 Aug 30;10(17):e37235. doi: 10.1016/j.heliyon.2024.e37235. eCollection 2024 Sep 15.

DOI:10.1016/j.heliyon.2024.e37235
PMID:39319129
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11419925/
Abstract

Heme-containing enzymes, critical across life's domains and promising for industrial use, face stability challenges. Despite the demand for robust industrial biocatalysts, the mechanisms underlying the thermal stability of heme enzymes remain poorly understood. Addressing this, our research utilizes a 'keystone cofactor heme-interaction approach' to enhance ligand binding and improve the stability of lignin peroxidase (LiP). We engineered mutants of the white-rot fungus LiP () to increase thermal stability by 8.66 °C and extend half-life by 29 times without losing catalytic efficiency at 60 °C, where typically, wild-type enzymes degrade. Molecular dynamics simulations reveal that an interlocked cofactor moiety contributes to enhanced structural stability in LiP variants. Additionally, a stability index developed from these simulations accurately predicts stabilizing mutations in other LiP isozymes. Using milled wood lignin, these mutants achieved triple the conversion yields at 40 °C compared to the wild type, offering insights for more sustainable white biotechnology through improved enzyme stability.

摘要

含血红素的酶在生命的各个领域都至关重要且具有工业应用前景,但面临稳定性挑战。尽管对强大的工业生物催化剂有需求,但血红素酶热稳定性的潜在机制仍知之甚少。为解决这一问题,我们的研究采用“关键辅因子 - 血红素相互作用方法”来增强配体结合并提高木质素过氧化物酶(LiP)的稳定性。我们构建了白腐真菌LiP()的突变体,使其热稳定性提高了8.66°C,半衰期延长了29倍,且在60°C(通常野生型酶会降解的温度)下不损失催化效率。分子动力学模拟表明,一个互锁的辅因子部分有助于增强LiP变体的结构稳定性。此外,从这些模拟中开发的稳定性指数准确预测了其他LiP同工酶中的稳定突变。使用磨木木素,这些突变体在40°C下的转化产率是野生型的三倍,通过提高酶的稳定性为更可持续的白色生物技术提供了见解。

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Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations.利用分子动力学模拟提高配体结合蛋白设计的效率。
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In silico-designed lignin peroxidase from shows enhanced acid stability for depolymerization of lignin.计算机设计的木质素过氧化物酶对木质素解聚表现出增强的酸稳定性。
Biotechnol Biofuels. 2018 Dec 10;11:325. doi: 10.1186/s13068-018-1324-4. eCollection 2018.