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山茶科中caleosin家族的基因组分析揭示了谱系特异性进化模式。

Genomic Analysis of the Caleosin Family in Theaceae Reveals Lineagespecific Evolutionary Patterns.

作者信息

Zhang Zaibao, Xiong Tao, Fan Tianyu

机构信息

School of Life and Health Science, Huzhou College, Huzhou, Zhejiang, China.

College of Life Science, Xinyang Normal University, Xinyang, Henan, China.

出版信息

Curr Protein Pept Sci. 2025;26(2):139-155. doi: 10.2174/0113892037321073240828051039.

Abstract

INTRODUCTION

Caleosins are recognized as the key proteins found in Lipid Droplets (LDs) and are crucial for the creation, maintenance, and breakdown of LDs. Nevertheless, our understanding of caleosins remains limited within Theaceae, a prominent botanical family encompassing economically significant tea and oil tea species.

METHODS

In this research, we conducted a comprehensive genome-wide exploration and examination of the caleosin family in Theaceae species with sequenced genomes. The gene number of was similar among Theaceae species. Segmental duplication was the main form of caleosin expansion in Shuchazao (SCZ), Huangdan (HD), Biyun (BY), Tieguanyin (TGY), Longjing (LJ), (Cla) and (CCH). Synteny analysis revealed one-to-more and more-to-one collinear relationships of caleosin genes among Theaceae species.

RESULTS

Caleosins in Theaceae are categorized into either the H-family or the L-family, each exhibiting distinct motif structures and physicochemical properties. Expression analysis revealed an apparent flower-predominant expression pattern of genes in Theaceae species. In addition, most paralogous pairs displayed expression divergence.

CONCLUSION

This research enhanced our understanding of the lineage-specific evolution of genes in Theaceae, and is valuable for future functional analysis of this gene family in tea and oil-tea species.

摘要

引言

钙结合蛋白被认为是脂滴(LDs)中的关键蛋白质,对脂滴的形成、维持和分解至关重要。然而,在包含具有重要经济价值的茶树和油茶物种的著名植物科——山茶科中,我们对钙结合蛋白的了解仍然有限。

方法

在本研究中,我们对已测序基因组的山茶科物种中的钙结合蛋白家族进行了全面的全基因组探索和研究。山茶科物种中的基因数量相似。片段重复是舒茶早(SCZ)、黄旦(HD)、碧云(BY)、铁观音(TGY)、龙井(LJ)、[物种名称未给出(Cla)]和[物种名称未给出(CCH)]中钙结合蛋白扩增的主要形式。共线性分析揭示了山茶科物种中钙结合蛋白基因的一对多和多对一的共线关系。

结果

山茶科中的钙结合蛋白分为H家族或L家族,每个家族都表现出独特的基序结构和理化性质。表达分析揭示了山茶科物种中基因明显的以花为主的表达模式。此外,大多数旁系同源对表现出表达差异。

结论

本研究增强了我们对山茶科中基因谱系特异性进化的理解,对该基因家族未来在茶树和油茶物种中的功能分析具有重要价值。

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