收获点时亚利桑那州和加利福尼亚州商业领域的哈密瓜和土壤中的细菌多样性。
Bacterial diversity of cantaloupes and soil from Arizona and California commercial fields at the point of harvest.
机构信息
School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, Arizona, United States of America.
University of California, Agricultural and Natural Resources, Cooperative Extension, Fresno, California, United States of America.
出版信息
PLoS One. 2024 Sep 26;19(9):e0307477. doi: 10.1371/journal.pone.0307477. eCollection 2024.
Across the United States, melons are a high demand crop reaching a net production of 2.7 million tons in 2020 with an economic value of $915 million dollars. The goal of this study was to characterize the bacterial diversity of cantaloupe rinds and soil from commercial melon fields at the point of harvest from two major production regions, Arizona, and California. Cantaloupes and composite soil samples were collected from three different commercial production fields, including Imperial Valley, CA, Central Valley, CA, and Yuma Valley, AZ, at the point of harvest over a three-month period, and 16S rRNA gene amplicon sequencing was used to assess bacterial diversity and community structure. The Shannon Diversity Index showed higher diversity among soil compared to the cantaloupe rind regardless of the sampling location. Regional diversity of soil differed significantly, whereas there was no difference in diversity on cantaloupe surfaces. Bray-Curtis Principal Coordinate Analysis (PCoA) dissimilarity distance matrix found the samples clustered by soil and melon individually, and then clustered tighter by region for the soil samples compared to the cantaloupe samples. Taxonomic analysis found total families among the regions to be 52 for the soil samples and 12 among cantaloupes from all three locations, but composition and abundance did vary between the three locations. Core microbiome analysis identified two taxa shared among soil and cantaloupe which were Bacillaceae and Micrococcaceae. This study lays the foundation for characterizing the cantaloupe microbiome at the point of harvest that provides the cantaloupe industry with those bacterial families that are potentially present entering post-harvest processing, which could assist in improving cantaloupe safety, shelf-life, cantaloupe quality and other critical aspects of cantaloupe post-harvest practices.
在美国各地,甜瓜是一种高需求的作物,2020 年的净产量达到 270 万吨,经济价值为 9.15 亿美元。本研究的目的是描述收获时来自两个主要生产地区(亚利桑那州和加利福尼亚州)商业甜瓜田的哈密瓜果皮和土壤中的细菌多样性。在三个月的时间里,从三个不同的商业生产地(加利福尼亚州的帝国谷、加利福尼亚州的中央谷和亚利桑那州的尤马谷)的收获点收集了哈密瓜和复合土壤样本,并使用 16S rRNA 基因扩增子测序来评估细菌多样性和群落结构。香农多样性指数显示,无论采样地点如何,土壤中的多样性都高于哈密瓜果皮。土壤的区域多样性差异显著,而哈密瓜表面的多样性没有差异。Bray-Curtis 主坐标分析(PCoA)差异距离矩阵发现,土壤和甜瓜样本分别聚类,然后土壤样本比甜瓜样本聚类更紧密,按区域聚类。分类分析发现,土壤样本的总科数为 52 个,来自三个地点的甜瓜样本的总科数为 12 个,但组成和丰度在三个地点之间存在差异。核心微生物组分析确定了土壤和哈密瓜之间共有的两个分类群,分别是芽孢杆菌科和微球菌科。本研究为收获时哈密瓜微生物组的特征提供了基础,为哈密瓜产业提供了可能进入采后加工过程的细菌家族,这有助于提高哈密瓜的安全性、货架期、哈密瓜质量和其他关键方面的采后实践。
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