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2011 年至 2022 年中国宁夏回族自治区诺如病毒的流行情况和基因型分布。

Prevalence and genotype distribution of norovirus in Ningxia Hui Autonomous Region, China, from 2011 to 2022.

机构信息

Ningxia Hui Autonomous Region Center for Disease Control and Prevention, Yinchuan, 750004, China.

National Institute for Viral Disease Control and Prevention, Chinese Center for Viral Disease Control and Prevention, Beijing, 102206, China.

出版信息

Virol J. 2024 Sep 27;21(1):232. doi: 10.1186/s12985-024-02498-5.

DOI:10.1186/s12985-024-02498-5
PMID:39334155
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11430420/
Abstract

The norovirus (NoV) genome is diverse. Therefore, this study explored the epidemiological characteristics and genetic features of NoV in Ningxia Hui Autonomous Region, China, from 2011 to 2022 to clarify the genetic diversity in this region. Stool samples were screened for NoV and then sequenced and genotyped. In total, 1,788 of 13,083 specimens were NoV -positive (13.67%); 204 (1.56%) and 1,584 (12.11%) cases were GI and GII, respectively. Additionally, 559 were NoV infection with other viruses (4.27%), primarily with rotavirus (277/559, 49.55%). The NoV incidence rate was the highest among children aged 0-2 years (18.09%, 1054/5,828) and lowest among adults aged 45-64 years (110/1,495, 7.36%); it was also higher in the winter and spring than in the other seasons. GI.3[P3] was the dominant GI genotype. The dominant GII genotype changed roughly every two years. In the GII group, GII.4 was the most common genotype (46.79%), followed by GII.3 (21.34%), GII.2 (12.34%), and GII.17 (9.77%). There were three variants of GII.4 Den Haag, GII.4 New Orleans and GII.4 Sydney identified in the detected GII.4 strains, with GII.4 Sydney dominating. The GII.4 (87.36%), GII.3 (86.35%), and GII.2 (72.92%) strains were primarily detected in children, whereas it was the GII.17 (52.63%) strain in adults. Overall, the NoV genotypes in the Ningxia Hui Autonomous Region were diverse. Primarily, GII groups were dominant, but this changed over time.

摘要

诺如病毒(NoV)基因组具有多样性。因此,本研究旨在探讨 2011 年至 2022 年中国宁夏回族自治区诺如病毒的流行特征和遗传特征,以明确该地区的遗传多样性。对粪便样本进行诺如病毒筛查,然后进行测序和基因分型。在 13083 份标本中,共有 1788 份(13.67%)为诺如病毒阳性;204 份(1.56%)和 1584 份(12.11%)为 GI 和 GII 型,另外 559 份(4.27%)为其他病毒合并诺如病毒感染,其中以轮状病毒为主(277/559,49.55%)。0-2 岁儿童的 NoV 发病率最高(18.09%,1054/5828),45-64 岁成人的发病率最低(110/1495,7.36%);冬春季高于其他季节。GI.3[P3]为主要的 GI 基因型。主导的 GII 基因型每两年左右发生变化。在 GII 组中,GII.4 是最常见的基因型(46.79%),其次是 GII.3(21.34%)、GII.2(12.34%)和 GII.17(9.77%)。在所检测的 GII.4 株中发现了三种变体 Den Haag、New Orleans 和 Sydney,其中 GII.4 Sydney 占主导地位。GII.4(87.36%)、GII.3(86.35%)和 GII.2(72.92%)株主要在儿童中检测到,而 GII.17(52.63%)株主要在成人中检测到。总体而言,宁夏回族自治区的诺如病毒基因型多样,主要以 GII 组为主,但随时间发生变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/273f/11430420/4a5ac1fd000f/12985_2024_2498_Fig6_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/273f/11430420/4a5ac1fd000f/12985_2024_2498_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/273f/11430420/474e8a788284/12985_2024_2498_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/273f/11430420/8adda0a99bb3/12985_2024_2498_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/273f/11430420/d5eee72f3e26/12985_2024_2498_Fig3_HTML.jpg
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