Nokchan Natakorn, Suthapot Praewa, Choochuen Pongsakorn, Khongcharoen Natthapon, Hongeng Suradej, Anurathapan Usanarat, Surachat Komwit, Sangkhathat Surasak
Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand.
Translational Medicine Research Center, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand.
J Pers Med. 2024 Sep 8;14(9):950. doi: 10.3390/jpm14090950.
Neuroblastoma is the most prevalent solid tumor in early childhood, with a 5-year overall survival rate of 40-60% in high-risk cases. Therefore, the identification of novel biomarkers for the diagnosis, prognosis, and therapy of neuroblastoma is crucial for improving the clinical outcomes of these patients. In this study, we conducted the whole-exome sequencing of 48 freshly frozen tumor samples obtained from the Biobank. Somatic variants were identified and selected using a bioinformatics analysis pipeline. The mutational signatures were determined using the Mutalisk online tool. Cancer driver genes and druggable mutations were predicted using the Cancer Genome Interpreter. The most common mutational signature was single base substitution 5. , , and were identified as the most frequently mutated genes. Using the Cancer Genome Interpreter, we identified five recurrent cancer driver mutations spanning , , , and , with the latter being novel and containing a missense mutation, R439C. We also identified 11 putative actionable mutations including Q1798*, Q2616*, and S636X, F1174L and R1275Q, P10L and Q1829E, R612S, D1670V, S1372L, and N577K. Our findings provide a comprehensive overview of the novel information relevant to the underlying molecular pathogenesis and therapeutic targets of neuroblastoma.
神经母细胞瘤是幼儿期最常见的实体瘤,高危病例的5年总生存率为40%-60%。因此,鉴定用于神经母细胞瘤诊断、预后和治疗的新型生物标志物对于改善这些患者的临床结局至关重要。在本研究中,我们对从生物样本库获得的48份新鲜冷冻肿瘤样本进行了全外显子组测序。使用生物信息学分析流程鉴定并筛选体细胞变异。使用Mutalisk在线工具确定突变特征。使用癌症基因组解释器预测癌症驱动基因和可成药突变。最常见的突变特征是单碱基替换5。 、 和 被鉴定为最常发生突变的基因。使用癌症基因组解释器,我们鉴定出五个复发性癌症驱动突变,分布于 、 、 和 ,其中后者是新发现的,包含一个错义突变R439C。我们还鉴定出11个推定的可成药突变,包括 中的Q1798*、Q2616*和S636X, 中的F1174L和R1275Q, 中的P10L和Q1829E, 中的R612S, 中的D1670V, 中的S1372L,以及 中的N577K。我们的研究结果全面概述了与神经母细胞瘤潜在分子发病机制和治疗靶点相关的新信息。