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对从保加利亚重症监护病房患者中分离出的属于高风险克隆ST357的产越南超广谱β-内酰胺酶-9的广泛耐药菌株的基因组洞察。

Genomic Insights into Vietnamese Extended-Spectrum β-Lactamase-9-Producing Extensively Drug-Resistant Isolates Belonging to the High-Risk Clone ST357 Obtained from Bulgarian Intensive Care Unit Patients.

作者信息

Strateva Tanya, Stratev Alexander, Peykov Slavil

机构信息

Department of Medical Microbiology "Corr. Mem. Prof. Ivan Mitov, MD, DMSc", Faculty of Medicine, Medical University of Sofia, 2 Zdrave Str., 1431 Sofia, Bulgaria.

Intensive Care Unit, University Multiprofile Hospital for Active Treatment 'St. Ivan Rilski', 15 Acad. Ivan Geshov Blvd., 1431 Sofia, Bulgaria.

出版信息

Pathogens. 2024 Aug 25;13(9):719. doi: 10.3390/pathogens13090719.

Abstract

Extensively drug-resistant (XDR-PA) has been highlighted as a serious public health threat. The present study aimed to explore the genomic characteristics of two Vietnamese extended-spectrum β-lactamase-9 (VEB-9)-producing XDR-PA isolates from Bulgaria in comparison to all -positive strains with available genomes. The isolates designated Pae51 and Pae52 were obtained from tracheobronchial aspirates of intensive care unit (ICU) patients. Antimicrobial susceptibility testing, whole-genome sequencing, RT-qPCR, and phylogenomic analysis were performed. Pae51 and Pae52 were resistant to most antipseudomonal β-lactams including carbapenems, aminoglycosides, and fluoroquinolones but remained susceptible to colistin and cefiderocol. Numerous resistance determinants were detected: , , , , , , , , , , , , , and . Both isolates carried complex integrons with and embedded next to the conservative 3' end sequences. A variety of virulence factors were also identified, including the type III secretion system exotoxin U. Pae51 and Pae52 differed by only four SNPs and belonged to the high-risk clone ST357. To our knowledge, this is the first report of -positive XDR-PA isolates in Bulgaria presenting a detailed genomic analysis. The development of novel antimicrobial strategies for such pathogens should be an essential part of infection control stewardship practices in ICU wards.

摘要

广泛耐药鲍曼不动杆菌(XDR-PA)已被视为严重的公共卫生威胁。本研究旨在探究来自保加利亚的两株产超广谱β-内酰胺酶9(VEB-9)的XDR-PA分离株的基因组特征,并与所有具有可用基因组的阳性菌株进行比较。命名为Pae51和Pae52的分离株取自重症监护病房(ICU)患者的气管支气管吸出物。进行了药敏试验、全基因组测序、RT-qPCR和系统基因组分析。Pae51和Pae52对包括碳青霉烯类、氨基糖苷类和氟喹诺酮类在内的大多数抗假单胞菌β-内酰胺类药物耐药,但对黏菌素和头孢地尔仍敏感。检测到许多耐药决定簇:……(此处原文未完整列出具体耐药决定簇内容)。两株分离株均携带复杂整合子,……(此处原文未完整列出具体整合子相关内容)嵌入保守的3'末端序列旁边。还鉴定出多种毒力因子,包括III型分泌系统外毒素U。Pae51和Pae52仅相差四个单核苷酸多态性(SNP),属于高危克隆ST357。据我们所知,这是保加利亚首次报道对……(此处原文未完整列出具体内容)呈阳性的XDR-PA分离株并进行详细基因组分析。针对此类病原体开发新型抗菌策略应成为ICU病房感染控制管理实践的重要组成部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f268/11435151/b6b1ab482f16/pathogens-13-00719-g001.jpg

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