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深海块状硫化物矿床浅层区 Zetaproteobacteria 和 Gamma-proteobacteria 的生态生理学的宏基因组学研究

Metagenomic Insights into Ecophysiology of Zetaproteobacteria and Gammaproteobacteria in Shallow Zones within Deep-sea Massive Sulfide Deposits.

机构信息

Department of Biological Sciences, Graduate School of Science, The University of Tokyo.

Japan Collection of Microorganisms (JCM), RIKEN BioResource Research Center.

出版信息

Microbes Environ. 2024;39(3). doi: 10.1264/jsme2.ME23104.

DOI:10.1264/jsme2.ME23104
PMID:39343535
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11427306/
Abstract

Deep-sea massive sulfide deposits serve as energy sources for chemosynthetic ecosystems in dark, cold environments even after hydrothermal activity ceases. However, the vertical distribution of microbial communities within sulfide deposits along their depth from the seafloor as well as their ecological roles remain unclear. We herein conducted a culture-independent metagenomic ana-lysis of a core sample of massive sulfide deposits collected in a hydrothermally inactive field of the Southern Mariana Trough, Western Pacific, by drilling (sample depth: 0.52‍ ‍m below the seafloor). Based on the gene context of the metagenome-assembled genomes (MAGs) obtained, we showed the metabolic potential of as-yet-uncultivated microorganisms, particularly those unique to the shallow zone rich in iron hydroxides. Some members of Gammaproteobacteria have potential for the oxidation of reduced sulfur species (such as sulfide and thiosulfate) to sulfate coupled to nitrate reduction to ammonia and carbon fixation via the Calvin-Benson-Bassham (CBB) cycle, as the primary producers. The Zetaproteobacteria member has potential for iron oxidation coupled with microaerobic respiration. A comparative ana-lysis with previously reported metagenomes from deeper zones (~2‍ ‍m below the seafloor) of massive sulfide deposits revealed a difference in the relative abundance of each putative primary producer between the shallow and deep zones. Our results expand knowledge on the ecological potential of uncultivated microorganisms in deep-sea massive sulfide deposits and provide insights into the vertical distribution patterns of chemosynthetic ecosystems.

摘要

深海块状硫化物矿床是热液活动停止后,黑暗、寒冷环境中化能合成生态系统的能源。然而,从海底深度来看,硫化物矿床中微生物群落的垂直分布及其生态角色仍然不清楚。本研究通过钻探(样本深度:海底以下 0.52m)对西太平洋马里亚纳海槽无热液活动区采集的块状硫化物矿床岩芯样本进行了无培养宏基因组分析。基于获得的宏基因组组装基因组(MAG)的基因背景,我们展示了尚未培养的微生物的代谢潜力,特别是富含铁氢氧化物的浅区特有的微生物。一些γ变形菌门成员具有将还原态硫物种(如硫化物和硫代硫酸盐)氧化为硫酸盐的潜力,同时将硝酸盐还原为氨和通过卡尔文-本森-巴斯汉姆(CBB)循环固定碳,作为初级生产者。Zetaproteobacteria 成员具有与微需氧呼吸偶联的铁氧化能力。与先前报道的来自块状硫化物矿床更深区域(~2m 以下海底)的宏基因组进行的比较分析表明,在浅区和深区之间,每个假定的初级生产者的相对丰度存在差异。我们的研究结果扩展了对深海块状硫化物矿床中未培养微生物生态潜力的认识,并为化能合成生态系统的垂直分布模式提供了新的见解。

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