Department of Cardiovascular, Yangpu Hospital, School of Medicine, Tongji University, 200090 Shanghai, China.
Front Biosci (Landmark Ed). 2024 Sep 24;29(9):335. doi: 10.31083/j.fbl2909335.
Coronary heart disease (CHD) is an intricate and multifaceted cardiovascular disorder that contributes significantly to global morbidity and mortality. Early and accurate identification and diagnosis of CHD are paramount to ensuring patients receive optimal therapeutic interventions and satisfactory outcomes.
Data on CHD gene expression were obtained from the Gene Expression Omnibus (GEO) repository and potential hub genes were screened through gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), weighted gene co-expression network analysis (WGCNA), and least absolute shrinkage and selection operator (LASSO) analyses. Functional validation of these hub genes was conducted by interfering with them in human umbilical vein endothelial cells (HUVECs). Cell proliferation and apoptosis were assessed through cell counting kit-8 (CCK-8) and flow cytometry assays, respectively, while enzyme-linked immunosorbent assay (ELISA), quantitative polymerase chain reaction (qPCR), Western blot, and immunofluorescence were used to measure the expression of key indicators.
We identified 700 upregulated differentially expressed genes (DEGs) and 638 downregulated DEGs in CHD, and utilized LASSO analyses to screen disease potential biomarkers, such as zinc finger protein 429 (ZNF429). Interference with ZNF429 in HUVECs mitigated the CHD-induced decrease in cell proliferation and increase in apoptosis. Moreover, the expression of interleukin-1β (IL-1β), interleukin-6 (IL-6), tumor necrosis factor-alpha (TNF-α), vascular cell adhesion molecule-1 (VCAM-1), intercellular adhesion molecule-1 (ICAM-1), cluster of differentiation 62E (CD62E), and cluster of differentiation 62P (CD62P) was reduced, leading to decreased cellular inflammation and adhesion.
CHD-associated biomarker ZNF429 was identified through bioinformatics analysis to potentially regulate the expression of inflammatory factors , , and , along with adhesion molecules , , , and . This modulation influence was subsequently found to impact the progression of CHD. These findings offered valuable insights into potential targets for further investigation and therapeutic interventions for CHD management.
冠心病(CHD)是一种复杂且多方面的心血管疾病,对全球发病率和死亡率有重大影响。早期、准确地识别和诊断 CHD 对于确保患者接受最佳治疗干预和满意的治疗结果至关重要。
从基因表达综合数据库(GEO)中获取 CHD 基因表达数据,通过基因本体论(GO)、京都基因与基因组百科全书(KEGG)、加权基因共表达网络分析(WGCNA)和最小绝对值收缩和选择算子(LASSO)分析筛选潜在的枢纽基因。通过干扰人脐静脉内皮细胞(HUVEC)中的这些枢纽基因来验证其功能。通过细胞计数试剂盒-8(CCK-8)和流式细胞术分别评估细胞增殖和凋亡,酶联免疫吸附试验(ELISA)、定量聚合酶链反应(qPCR)、Western blot 和免疫荧光用于测量关键指标的表达。
我们鉴定了 700 个上调的差异表达基因(DEGs)和 638 个下调的 DEGs 在 CHD 中,并用 LASSO 分析筛选疾病潜在生物标志物,如锌指蛋白 429(ZNF429)。在 HUVEC 中干扰 ZNF429 可减轻 CHD 引起的细胞增殖减少和凋亡增加。此外,白细胞介素-1β(IL-1β)、白细胞介素-6(IL-6)、肿瘤坏死因子-α(TNF-α)、血管细胞黏附分子-1(VCAM-1)、细胞间黏附分子-1(ICAM-1)、分化簇 62E(CD62E)和分化簇 62P(CD62P)的表达减少,导致细胞炎症和黏附减少。
通过生物信息学分析鉴定出与 CHD 相关的生物标志物 ZNF429,可能调节炎症因子和黏附分子的表达,包括 、 、 、 、 、 、 。这种调节作用随后被发现影响 CHD 的进展。这些发现为 CHD 管理的进一步研究和治疗干预提供了有价值的靶点。