Bao Yiqiong, Xu Ran, Guo Jingjing
Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China.
Centre for Artificial Intelligence Driven Drug Discovery, Faculty of Applied Sciences, Macao Polytechnic University, Macao 999078, China.
Comput Biol Chem. 2024 Dec;113:108224. doi: 10.1016/j.compbiolchem.2024.108224. Epub 2024 Sep 27.
Participating in the Janus kinase-signal transducer and activator of transcription (JAK-STAT) pathway, TYK2 emerges as a promising therapy target in controlling various autoimmune diseases, including psoriasis and multiple sclerosis. Deucravacitinib (DEU) is a novel oral TYK2-specific inhibitor approved in 2022 that is clinically effective in moderate to severe psoriasis trials. Upon the AlphaFold2 predicted TYK2 pseudokinase domain (JH2) and kinase domain (JH1), we explored the details of the underlined allosteric inhibition mechanism on TYK2 JH2-JH1 with the aid of molecular dynamics simulation. Our results suggest that the allosteric inhibition of DEU on TYK2 is accomplished by affecting the JH2-JH1 interface and hampering the state transition and ATP binding in JH1. Particularly, DEU binding stabilized the autoinhibitory interface between JH2 and JH1 while disrupting the formation of the activation interface. As a result, the negative regulation of JH2 on JH1 was greatly enhanced. These findings offer additional details on the pseudokinase-dependent autoinhibition of the JAK kinase domain and provide theoretical support for the JH2-targeted drug discovery in JAK members.
酪氨酸激酶2(TYK2)参与Janus激酶-信号转导子和转录激活子(JAK-STAT)途径,在控制包括银屑病和多发性硬化症在内的各种自身免疫性疾病方面,成为一个有前景的治疗靶点。德卡伐替尼(DEU)是一种于2022年获批的新型口服TYK2特异性抑制剂,在中度至重度银屑病试验中具有临床疗效。基于AlphaFold2预测的TYK2假激酶结构域(JH2)和激酶结构域(JH1),我们借助分子动力学模拟探究了DEU对TYK2 JH2-JH1的下划线变构抑制机制的细节。我们的结果表明,DEU对TYK2的变构抑制是通过影响JH2-JH1界面并阻碍JH1中的状态转变和ATP结合来实现的。特别是,DEU结合稳定了JH2和JH1之间的自抑制界面,同时破坏了激活界面的形成。结果,JH2对JH1的负调控大大增强。这些发现为JAK激酶结构域的假激酶依赖性自抑制提供了更多细节,并为JAK成员中以JH2为靶点的药物发现提供了理论支持。