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[在两个强极化磁场中通过¹³C-NMR对牛碳酸酐酶B的分子动力学研究。I. 天然酶多肽链的分子内流动性]

[Study of molecular dynamics of bovine carbonic anhydrase B by 13C-NMR in two strongly polarizing magnetic fields. I. Intramolecular mobility of polypeptide chains of the native enzyme].

作者信息

Iarvet Iu I, Olivson A I, Arguraĭuia R K, Lippmaa E T

出版信息

Mol Biol (Mosk). 1985 Sep-Oct;19(5):1358-66.

PMID:3935911
Abstract

The study of the dynamics of enzyme segmental movement is of considerable importance in the understanding of the physics of the catalytic function of these macromolecules, which cannot be adequately described without introduction of intramolecular mobility of their polypeptide chains. At present high resolution [13C]NMR is mostly used as an effective and selective method for the observation of spectral and relaxation parameters that are sensitive to structure, conformation and local motion. The molecular dynamics of bovine carbonic anhydrase B (carbonate hydrolase EC. 4.2.1.1) in the native form was studied. Measurements of the relaxation parameters (T1, T2 and NOE) of the alpha-carbons of the polypeptide chain in two high magnetic fields (4.7 and 11.7 T) were carried out. The model-free approach of Lipari and Szabo to the interpretation of these experimental data show a satisfactory agreement between theory and experiment for these carbon nuclei if an internal degree of motion such as libration or restricted diffusion in a cone with angular amplitude in the 10 degrees less than theta less than or equal to 20 degrees range and an effective correlation time tau e approximately equal to 6 to 7 x 10(-11) S in addition to the tau R = 3 x 10(-8) S reorientation correlation time of the whole molecular is introduced.

摘要

研究酶的片段运动动力学对于理解这些大分子催化功能的物理机制具有相当重要的意义,若不考虑其多肽链的分子内流动性,就无法充分描述这种机制。目前,高分辨率的[13C]核磁共振大多用作一种有效且具选择性的方法,用于观测对结构、构象和局部运动敏感的光谱及弛豫参数。研究了天然形式的牛碳酸酐酶B(碳酸水解酶EC. 4.2.1.1)的分子动力学。在两个高磁场(4.7和11.7 T)下对多肽链α-碳的弛豫参数(T1、T2和NOE)进行了测量。如果引入诸如在角度幅度为10°<θ≤20°范围内的圆锥中的摆动或受限扩散等内部运动程度,以及有效相关时间τe约等于6至7×10⁻¹¹秒,再加上整个分子的τR = 3×10⁻⁸秒的重取向相关时间,那么Lipari和Szabo对这些实验数据进行解释的无模型方法表明,对于这些碳核,理论与实验之间具有令人满意的一致性。

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