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携带外源抗性基因的基因组特征分析。

Genomic characterization of harbouring an exogenous resistance gene.

机构信息

Department of Microbiology, Faculty of Pharmacy, Meijo University, Nagoya, Japan.

Department of Clinical Microbiology, School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.

出版信息

J Med Microbiol. 2024 Oct;73(10). doi: 10.1099/jmm.0.001904.

Abstract

Reports of β-lactamase-producing are increasing worldwide.. This study aimed to elucidate the molecular characteristics and evolution of β-lactamase-producing . A total of 159 clinical isolates were characterized using multi-locus sequence typing. Antimicrobial resistance genes and integrative and conjugative element (ICE) types were identified through PCR and DNA sequencing. The genetic structure of ICE was further investigated using whole-genome sequencing. Out of 159 clinical isolates, 20.8% (=33) were β-lactamase producers. Thirteen sequence types (STs) were identified. ST 103, 155, 165 and 388 have been identified in previous studies, suggesting that strains with these STs tend to acquire the β-lactamase gene . Among β-lactamase producers, 66.7% (=22) of were located on ICE. The ICEs could be classified into two groups based on their sequence (types I and II). Among these strains, 2017-Y3 harboured a macrolide resistance gene, , in ICE. A comparative analysis of the ICE region of this strain and those from other countries suggested that each isolate was derived from ICE type I or II. These regions, including ), were similar to those of Tn, which is commonly found in . This study revealed several STs associated with the acquisition of β-lactamase genes on ICEs. Additionally, ICE evolution involved the acquisition of exogenous genes. The accumulation of resistance genes in ICE raises concerns regarding the emergence of multidrug-resistant .

摘要

β-内酰胺酶产生菌的报告在全球范围内不断增加。。。本研究旨在阐明产β-内酰胺酶的分子特征和进化。使用多位点序列分型对 159 株临床分离株进行了特征描述。通过 PCR 和 DNA 测序鉴定了抗生素耐药基因和整合子-转座子(ICE)类型。通过全基因组测序进一步研究了 ICE 的遗传结构。在 159 株临床分离株中,有 20.8%(=33)为产β-内酰胺酶菌。共鉴定出 13 种序列型(ST)。以前的研究已经鉴定出 ST103、155、165 和 388,这表明具有这些 ST 的菌株倾向于获得β-内酰胺酶基因。在产β-内酰胺酶菌中,有 66.7%(=22)位于 ICE 上。根据其序列(类型 I 和 II),可将 ICE 分为两组。在这些菌株中,2017-Y3 的 ICE 中携带了一个大环内酯类耐药基因。对该菌株与其他国家 ICE 区域的比较分析表明,每个分离株均源自 ICE 类型 I 或 II。这些区域包括),与普遍存在于的 Tn 相似。本研究揭示了几种与 ICE 上β-内酰胺酶基因获得相关的 ST。此外,ICE 的进化涉及外源性基因的获取。ICE 中耐药基因的积累令人担忧多药耐药菌的出现。

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