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如何寻找并揭示一个隐藏的中间体?取向外部电场下双质子转移反应中非同步性的ELF拓扑描述。

How to search for and reveal a hidden intermediate? The ELF topological description of non-synchronicity in double proton transfer reactions under oriented external electric field.

作者信息

Labet Vanessa, Geoffroy-Neveux Antoine, Alikhani Mohammad Esmaïl

机构信息

Sorbonne Université CNRS, MONARIS, UMR8233, 75005, Paris, France.

出版信息

J Mol Model. 2024 Oct 4;30(11):367. doi: 10.1007/s00894-024-06163-0.

Abstract

CONTEXT

The nature of double intermolecular proton transfer was studied with the ELF topological approach in two model dimers (the formic acid homodimer and the 1,2,3-triazole-guanidine heterodimer) under an oriented external electric field. It has been shown that each of the two dimers can have either a one-step (one transition state structure) or two-step (two transition state structures) reaction path, depending on the intensity and orientation of the external electric field. The presence of a singularly broad shoulder (plateau in the case of homodimer and plateau-like for heterodimer) around the formal transition state structure results from the strong asynchronicity of the reaction. A careful ELF topological analysis of the nature of protons, hydride (localized) or roaming (delocalized) proton, along the reaction path allowed us to unambiguously classify the one-step mechanisms governing the double-proton transfer reactions into three distinct classes: (1) concerted-synchronous, when two events (roaming proton regions) completely overlap, (2) concerted-asynchronous, when two events (roaming proton regions) partially overlap, and (3) two-stage one-step non-concerted, when two roaming proton regions are separated by a "hidden intermediate region". All the structures belonging to this separatrix region are of the zwitterion form.

METHODS

Geometry optimization of the stationary points on the potential energy surface was performed using density functional theory-wB97XD functional-in combination with the 6-311+ +G(2d, 2p) basis set for all the atoms. All first-principles calculations were performed using the Gaussian 09 quantum chemical packages. We also used the electron localization function (ELF) to reveal the nature of the proton along the reaction path: a bound proton (hydride) becomes a roaming proton (carrying a tiny negative charge ≈ 0.3 e) exchanging with two adjacent atoms via two attractors (topological critical points with (3, - 3) signature). The ELF analyses were performed using the TopMod package.

摘要

背景

采用电子定域函数(ELF)拓扑方法,在定向外部电场作用下,对两个模型二聚体(甲酸同二聚体和1,2,3 - 三唑 - 胍异二聚体)中的双分子间质子转移性质进行了研究。结果表明,取决于外部电场的强度和方向,两个二聚体中的每一个都可以具有一步(一个过渡态结构)或两步(两个过渡态结构)反应路径。在形式上的过渡态结构周围存在一个特别宽的肩峰(同二聚体情况下为平台,异二聚体情况下为类平台)是由反应的强非同步性导致的。沿着反应路径对质子、氢化物(定域)或游动(离域)质子的性质进行仔细的ELF拓扑分析,使我们能够明确地将控制双质子转移反应的一步机制分为三个不同的类别:(1)协同同步,即两个事件(游质子区域)完全重叠;(2)协同异步,即两个事件(游质子区域)部分重叠;(3)两阶段一步非协同,即两个游质子区域被一个“隐藏中间区域”隔开。属于该分界线区域的所有结构均为两性离子形式。

方法

使用密度泛函理论 - wB97XD泛函结合针对所有原子的6 - 311++G(2d, 2p)基组,对势能面上的驻点进行几何优化。所有第一性原理计算均使用高斯09量子化学软件包进行。我们还使用电子定域函数(ELF)来揭示沿着反应路径的质子性质:一个束缚质子(氢化物)变成一个游动质子(带有微小负电荷≈0.3e),通过两个吸引子(具有(3, - 3)特征的拓扑临界点)与两个相邻原子交换。ELF分析使用TopMod软件包进行。

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