Indian Institute of Science Education and Research (IISER), Berhampur, Odisha, India.
NMR Biomed. 2024 Dec;37(12):e5272. doi: 10.1002/nbm.5272. Epub 2024 Oct 5.
Since the overall glioma mass and its subcomponents-enhancing region (malignant part of the tumor), non-enhancing (less aggressive tumor cells), necrotic core (dead cells), and edema (water deposition)-are complex and irregular structures, non-Euclidean geometric measures such as fractal dimension (FD or "fractality") and lacunarity are needed to quantify their structural complexity. Fractality measures the extent of structural irregularity, while lacunarity measures the spatial distribution or gaps. The complex geometric patterns of the glioma subcomponents may be closely associated with the grade and molecular landscape. Therefore, we measured FD and lacunarity in the glioma subcomponents and developed machine learning models to discriminate between tumor grades and isocitrate dehydrogenase (IDH) gene status. 3D fractal dimension (FD3D) and lacunarity (Lac3D) were measured for the enhancing, non-enhancing plus necrotic core, and edema-subcomponents using preoperative structural-MRI obtained from the The Cancer Genome Atlas (TCGA) and University of California San Francisco Preoperative Diffuse Glioma MRI (UCSF-PDGM) glioma cohorts. The FD3D and Lac3D measures of the tumor-subcomponents were then compared across glioma grades (HGGs: high-grade gliomas vs. LGGs: low-grade gliomas) and IDH status (mutant vs. wild type). Using these measures, machine learning platforms discriminative of glioma grade and IDH status were developed. Kaplan-Meier survival analysis was used to assess the prognostic significance of FD3D and Lac3D measurements. HGG exhibited significantly higher fractality and lower lacunarity in the enhancing subcomponent, along with lower fractality in the non-enhancing subcomponent compared to LGG. This suggests that a highly irregular and complex geometry in the enhancing-subcomponent is a characteristic feature of HGGs. A comparison of FD3D and Lac3D between IDH-wild type and IDH-mutant gliomas revealed that mutant gliomas had 2.5-fold lower FD3D in the enhancing-subcomponent and higher FD3D with lower Lac3D in the non-enhancing subcomponent, indicating a less complex and smooth enhancing subcomponent, and a more continuous non-enhancing subcomponent as features of IDH-mutant gliomas. Supervised ML models using FD3D from both the enhancing and non-enhancing subcomponents together demonstrated high-sensitivity in discriminating glioma grades (97.9%) and IDH status (~94.4%). A combined fractal estimation of the enhancing and non-enhancing subcomponents using MR images could serve as a non-invasive, precise, and quantitative measure for discriminating glioma grade and IDH status. The combination of 2-hydroxyglutarate-magnetic resonance spectroscopy (2HG-MRS) with FD3D and Lac3D quantification may be established as a robust imaging signature for glioma subtyping.
由于胶质瘤的整体质量及其亚组分——增强区(肿瘤的恶性部分)、非增强区(侵袭性较低的肿瘤细胞)、坏死核心(死亡细胞)和水肿(水沉积)——是复杂和不规则的结构,因此需要使用分形维数(FD 或“分形性”)和空隙度等非欧几里得几何度量来量化其结构复杂性。分形性衡量结构不规则的程度,而空隙度衡量空间分布或间隙。胶质瘤亚组分的复杂几何模式可能与分级和分子特征密切相关。因此,我们测量了胶质瘤亚组分的分形维数和空隙度,并开发了机器学习模型来区分肿瘤分级和异柠檬酸脱氢酶(IDH)基因状态。使用来自癌症基因组图谱(TCGA)和加利福尼亚大学旧金山分校术前弥漫性胶质瘤 MRI(UCSF-PDGM)胶质瘤队列的术前结构 MRI 测量增强、非增强加坏死核心和水肿亚组分的 3D 分形维数(FD3D)和空隙度(Lac3D)。然后比较胶质瘤分级(高级别胶质瘤[HGG]与低级别胶质瘤[LGG])和 IDH 状态(突变型与野生型)中肿瘤亚组分的 FD3D 和 Lac3D 测量值。使用这些措施,开发了能够区分胶质瘤分级和 IDH 状态的机器学习平台。使用 Kaplan-Meier 生存分析评估 FD3D 和 Lac3D 测量值的预后意义。与 LGG 相比,HGG 的增强子组分的分形性显著更高,而空隙度更低,而非增强子组分的分形性也更低。这表明增强子组分中高度不规则和复杂的几何形状是 HGG 的特征。IDH 野生型和 IDH 突变型胶质瘤之间的 FD3D 和 Lac3D 比较表明,突变型胶质瘤的增强子组分 FD3D 降低了约 2.5 倍,而非增强子组分的 FD3D 降低,空隙度升高,这表明 IDH 突变型胶质瘤的增强子组分的复杂性和光滑性降低,非增强子组分的连续性增加。使用增强和非增强子组分的 FD3D 进行的监督机器学习模型在区分胶质瘤分级(97.9%)和 IDH 状态(94.4%)方面表现出很高的灵敏度。使用磁共振成像对增强和非增强子组分进行联合分形估计,可以作为区分胶质瘤分级和 IDH 状态的一种非侵入性、精确和定量的方法。将 2-羟基戊二酸磁共振波谱(2HG-MRS)与 FD3D 和 Lac3D 定量相结合,可能建立一种用于胶质瘤亚分型的稳健成像特征。