Şahin Yunus, Nazarov Taras, Ünlü Ercan Selçuk, Smertenko Andrei, Zencrici Nusret
Institute of Biological Chemistry Washington State University Pullman Washington USA.
Department of Biology, Faculty of Arts and Science Bolu Abant İzzet Baysal University Bolu Turkey.
Plant Direct. 2024 Oct 4;8(10):e70007. doi: 10.1002/pld3.70007. eCollection 2024 Oct.
Although peroxisomes are integral for both primary and secondary metabolism, how developmental changes affect activity of peroxisomes remains poorly understood. Here, we used published RNA-seq data to analyze the expression patterns of genes encoding 21 peroxisome metabolic pathways at successive developmental stages of and . Photorespiration was the most represented pathway in adult leaf relative to the juvenile stages. Components of reactive oxygen species (ROS)/reactive nitrogen species (RNS) metabolism, NADPH regeneration, and catabolism of polyamines were also enriched at later stages of leaf differentiation. The most commonly upregulated gene in differentiated leaves across all datasets of both species was (). functions in catabolism of polyamines where it converts 4-aminobutyraldehyde (ABAL) to 4-aminobutyrate (GABA). We tested the outcome of RNA-seq analysis by qRT-PCR in developing ssp. (Einkorn) seedlings. Consistent with the outcomes of RNA-seq analysis, transcription of and () were upregulated in older seedlings. CAT3 is an essential peroxisome biogenesis factor and a key enzyme of ROS homeostasis. Furthermore, exogenous application of GABA resulted in higher peroxisome abundance and transcriptional upregulation of and a gene encoding another peroxisome biogenesis factor responsible for peroxisome fission, (), in leaves. We propose that GABA contributes to regulation of peroxisome fission machinery during leaf differentiation.
尽管过氧化物酶体对初级和次级代谢均不可或缺,但发育变化如何影响过氧化物酶体的活性仍知之甚少。在此,我们利用已发表的RNA测序数据,分析了在[物种1]和[物种2]连续发育阶段编码21种过氧化物酶体代谢途径的基因的表达模式。相对于幼叶阶段,光呼吸是成叶中最具代表性的途径。活性氧(ROS)/活性氮(RNS)代谢、NADPH再生以及多胺分解代谢的成分在叶片分化后期也有所富集。在两个物种的所有数据集中,分化叶片中最常上调的基因是[基因名称]。[基因名称]在多胺分解代谢中发挥作用,将4-氨基丁醛(ABAL)转化为4-氨基丁酸(GABA)。我们通过定量逆转录聚合酶链反应(qRT-PCR)在发育中的[物种1]亚种[亚种名称](一粒小麦)幼苗中测试了RNA测序分析的结果。与RNA测序分析结果一致,[基因名称]和[另一个基因名称]在较老的幼苗中表达上调。CAT3是一种重要的过氧化物酶体生物发生因子,也是ROS稳态的关键酶。此外,外源施用GABA导致叶片中过氧化物酶体丰度增加,以及[基因名称]和一个编码负责过氧化物酶体分裂的另一种过氧化物酶体生物发生因子的基因[基因名称]转录上调。我们提出,GABA在叶片分化过程中有助于调节过氧化物酶体分裂机制。