Suppr超能文献

O-GlcNAc数据库:介绍基于社区反馈开发的新功能和工具。

The O-GlcNAc database: introducing new features and tools developed from community feedback.

作者信息

Malard Florian, Massman Lilyanna, Campagne Sébastien, Olivier-Van Stichelen Stephanie

机构信息

INSERM U1212, CNRS UMR5320, ARNA Laboratory, University of Bordeaux, Bordeaux, France.

Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, 53226, USA.

出版信息

Anal Bioanal Chem. 2025 Feb;417(5):879-884. doi: 10.1007/s00216-024-05571-8. Epub 2024 Oct 8.

Abstract

O-GlcNAc is a reversible post-translational modification found on serine and threonine residues of nucleocytoplasmic proteins. Four years ago, we released the O-GlcNAc Database ( oglcnac.mcw.edu ), a comprehensive catalog of O-GlcNAcylated proteins that has become one of the most cited resources in the field, with hundreds of unique users per month. We are now presenting an updated O-GlcNAc Database, which includes nearly 20,000 O-GlcNAcylated proteins and 48 species, marking substantial growth in data volume and scope. This paper presents the most noteworthy features implemented over the last year, often originating from feedback from the O-GlcNAc community. Among these features, we provide a brief overview of the database content, introduce our new protein viewer mode, and discuss the implementation of subcellular localization information and its applications in the O-GlcNAc score. We also provide an interface to use CytOVS, a tool designed to evaluate and sort O-GlcNAcome datasets derived from MS experiments. In conclusion, this new and improved O-GlcNAc Database represents a significant advancement in providing a comprehensive and expanded resource for researchers in the field of O-GlcNAc biology.

摘要

O-连接的N-乙酰葡糖胺(O-GlcNAc)是一种在核质蛋白的丝氨酸和苏氨酸残基上发现的可逆翻译后修饰。四年前,我们发布了O-GlcNAc数据库(oglcnac.mcw.edu),这是一个O-GlcNAc化蛋白的综合目录,已成为该领域引用率最高的资源之一,每月有数百名独立用户。我们现在展示的是一个更新后的O-GlcNAc数据库,其中包括近20000个O-GlcNAc化蛋白和48个物种,标志着数据量和范围的大幅增长。本文介绍了过去一年实现的最值得注意的功能,这些功能通常源自O-GlcNAc社区的反馈。在这些功能中,我们简要概述了数据库内容,介绍了我们新的蛋白质查看模式,并讨论了亚细胞定位信息的实现及其在O-GlcNAc评分中的应用。我们还提供了一个使用CytOVS的接口,CytOVS是一个用于评估和分类源自质谱实验的O-GlcNAcome数据集的工具。总之,这个新的、经过改进的O-GlcNAc数据库代表了在为O-GlcNAc生物学领域的研究人员提供全面且扩展的资源方面取得的重大进展。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验