Nunes Vinicius S, Rogério Alexandre P, Abrahão Odonírio, Serhan Charles N
Programa de Pós-Graduação em Produtos Bioativos e Biociências, Universidade Federal do Rio de Janeiro, Macaé, Rio de Janeiro, Brazil; Laboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Laboratório de Imunofarmacologia Experimental, Universidade Federal do Triângulo Mineiro, Uberaba, Minas Gerais, Brazil.
Comput Biol Chem. 2024 Dec;113:108236. doi: 10.1016/j.compbiolchem.2024.108236. Epub 2024 Oct 6.
Leukotriene B4 (LTB) is a lipid inflammatory mediator derived from arachidonic acid (AA). Leukotriene B4 receptor 1 (BLT1), a G protein-coupled receptor (GPCR), is a receptor of LTB. Nonetheless, the resolution of inflammation is driven by specialized pro-resolving lipid mediators (SPMs) such as resolvins E1 (RvE1) and E2 (RvE2). Both resolvins are derived from omega-3 fatty acid eicosapentaenoic acid (EPA). Here, long-term molecular dynamics simulations (MD) were performed to investigate the activation of the BLT1 receptor using two pro-resolution agonists (RvE1 and RvE2) and an inflammatory agonist (LTB). We have analyzed the receptor's activation state, electrostatic interactions, and the binding affinity the Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach. The results showed that LTB4 and RvE1 have kept the receptor in an active state by higher simulation time. MD showed that the ligand-receptor interactions occurred mainly through residues H94, R156, and R267. The MMPBSA calculations showed residues R156 and R267 were the two mainly hotspots. Our MMPBSA results were compatible with experimental results from other studies. Overall, the results from this study provide new insights into the activation mechanisms of the BLT1 receptor, reinforcing the role of critical residues and interactions in the binding of pro-resolution and pro-inflammatory agonists.
白三烯B4(LTB)是一种源自花生四烯酸(AA)的脂质炎症介质。白三烯B4受体1(BLT1)是一种G蛋白偶联受体(GPCR),是LTB的受体。尽管如此,炎症的消退是由专门的促消退脂质介质(SPM)驱动的,如消退素E1(RvE1)和E2(RvE2)。这两种消退素均源自ω-3脂肪酸二十碳五烯酸(EPA)。在此,我们进行了长期分子动力学模拟(MD),以研究使用两种促消退激动剂(RvE1和RvE2)和一种炎症激动剂(LTB)激活BLT1受体的情况。我们使用分子力学泊松-玻尔兹曼表面积(MMPBSA)方法分析了受体的激活状态、静电相互作用和结合亲和力。结果表明,LTB4和RvE1在更长的模拟时间内使受体保持在激活状态。MD显示,配体-受体相互作用主要通过残基H94、R156和R267发生。MMPBSA计算表明,残基R156和R267是两个主要的热点。我们的MMPBSA结果与其他研究的实验结果相符。总体而言,本研究结果为BLT1受体的激活机制提供了新的见解,强化了关键残基和相互作用在促消退和促炎激动剂结合中的作用。