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化脓性链球菌异羟肟酸铁载体结合蛋白FtsB配体多特异性的结构基础

Structural basis for the ligand promiscuity of the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes.

作者信息

Fernandez-Perez Jorge, Senoo Akinobu, Caaveiro Jose M M, Nakakido Makoto, de Vega Susana, Nakagawa Ichiro, Tsumoto Kouhei

机构信息

Department of Bioengineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.

Department of Bioengineering, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan; Laboratory of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan.

出版信息

Structure. 2024 Dec 5;32(12):2410-2421.e3. doi: 10.1016/j.str.2024.09.018. Epub 2024 Oct 11.

Abstract

Pathogenic bacteria must secure the uptake of nutritional metals such as iron for their growth, making their import systems attractive targets for the development of new antimicrobial modalities. In the pathogenic bacterium Streptococcus pyogenes, the iron uptake system FtsABCD transports iron encapsulated by siderophores of the hydroxamate class. However, the inability of S. pyogenes to produce these metabolites makes the biological and clinical relevance of this route unresolved. Herein, we demonstrated that the periplasmic binding protein FtsB recognizes not only the hydroxamate siderophore ferrichrome, as previously documented, but also ferrioxamine E (FOE), ferrioxamine B (FOB), and bisucaberin (BIS), each of them with high affinity (nM level). Up to seven aromatic residues in the binding pocket accommodate the variable backbones of the different siderophores through CH-π interactions, explaining ligand promiscuity. Collectively, our observations revealed how S. pyogenes exploits the diverse xenosiderophores produced by other microorganisms as iron sources to secure this precious nutrient.

摘要

致病细菌必须摄取铁等营养金属以促进其生长,这使得它们的铁摄取系统成为开发新型抗菌药物的有吸引力的靶点。在致病细菌化脓性链球菌中,铁摄取系统FtsABCD转运由异羟肟酸类铁载体包裹的铁。然而,化脓性链球菌无法产生这些代谢物,使得这条途径的生物学和临床相关性尚未明确。在此,我们证明周质结合蛋白FtsB不仅如先前文献所记载的那样能识别异羟肟酸铁载体高铁色素,还能识别去铁胺E(FOE)、去铁胺B(FOB)和双卡贝林(BIS),它们对FtsB均具有高亲和力(纳摩尔水平)。结合口袋中多达七个芳香族残基通过CH-π相互作用容纳不同铁载体的可变主链,这解释了配体的混杂性。总的来说,我们的观察结果揭示了化脓性链球菌如何利用其他微生物产生的多种外源性铁载体作为铁源来获取这种珍贵的营养物质。

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