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[13例先天性双侧输精管缺如不育患者致病基因突变的检测]

[Detection of pathogenic gene mutations in thirteen cases of congenital bilateral absence of vas deferens infertility patients].

作者信息

Tang Ying, Zhang Yongbo, Wu Danhong, Lin Yanhong, Lan Fenghua

机构信息

Fujian Provincial Key Laboratory of Transplant Biology, Fuzong Clinical Medical College of Fujian Medical University (The 900th Hospital of Joint Logistic Support Force, PLA), Fuzhou 350025, China.

出版信息

Beijing Da Xue Xue Bao Yi Xue Ban. 2024 Oct 18;56(5):763-774. doi: 10.19723/j.issn.1671-167X.2024.05.003.

Abstract

OBJECTIVE

To detect the cystic fibrosis transmembrane transduction regulator () gene mutations and congenital bilateral absence of vas deferens (CBAVD) susceptibility gene mutations in patients with CBAVD, and to explore their association with the risk of CBAVD.

METHODS

Whole-exome sequencing and Sanger sequencing validation were conducted on the pathogenic genes , adhesion G protein-coupled receptor G2 (), sodium channel epithelial 1 subunit beta (), carbonic anhydrase 12 (), and solute carrier family 9 member A3 () in thirteen cases of isolated CBAVD patients. The polymorphic loci, intron and flanking sequences of gene were amplified by polymerase chain reaction (PCR) followed by Sanger sequencing. Bioinformatics methods were employed for conservative analysis and deleterious prediction of novel susceptibility gene mutations in CBAVD. Genetic analysis was performed on the pedigree of one out of thirteen patients with CBAVD to evaluate the risk of inheritance in offspring.

RESULTS

Exome sequencing revealed gene exon mutations in only six of the thirteen CBAVD patients, with six missense mutations c.2684G>A(p.Ser895Asn), c.4056G>C(p.Gln1352His), c.2812G>(p.Val938Leu), c.3068T>G(p.Ile1023Arg), c.374T>C(p.Ile125Thr), c.1666A>G(p.Ile556Val)), and one nonsense mutation (c.1657C>T(p.Arg553Ter). Among these six patients, two also had the homozygous p.V470 site, additionally, mutations in gene exon regions were not detected in the remaining seven patients. Within the thirteen CBAVD patients, three carried the homozygous p.V470 polymorphic site, four carried the 5T allele, two carried the TG13 allele, and ten carried the c.-966T>G site. Four CBAVD patients simultaneously carried 2-3 of the aforementioned gene mutation sites. Susceptibility gene mutations in CBAVD among the thirteen patients included one missense mutation c.2312A>G(p.Asn771Ser), two SLC9A3 missense mutations c.2395T>C(p.Cys799Arg), c.493G>A(p.Val165Ile), one missense mutation c.1514G>A(p.Arg505His), and one missense mutation c.1061C>T (p.Ala354Val). Notably, the SLC9A3 gene c.493G>A (p.Val165Ile) mutation site was first identified in CBAVD patients. The five mutations exhibited an extremely low population mutation frequency in the gnomAD database, classifying them as rare mutations. Predictions from Mutation Taster and Polyphen-2 software indicated that the harmfulness level of the SLC9A3 gene c.493G>A (p.Val165Ile) site and the gene c.1514G>A (p.Arg505His) site were disease causing and probably damaging. The genetic analysis of one pedigree revealed that the c.1657C>T (p.Arg553Ter) mutation in the proband was a de novo mutation, as neither the proband's father nor mother carried this mutation. The proband and his spouse conceived a daughter through assisted reproductive technology, and the daughter inherited the proband's pathogenic mutation c.1657C>T (p.Arg553Ter).

CONCLUSION

gene mutations remain the leading cause of CBAVD in Chinese patients; however, the distribution and frequency of mutations differ from data reported in other domestic and international studies, highlighting the need to expand the mutation spectrum in Chinese CBAVD patients. The susceptibility genes , , , and may explain some cases of CBAVD without mutations. Given the lack of specific clinical manifestations in CBAVD patients, it is recommended that clinicians conduct further physical examinations and consider scrotal or transrectal ultrasound before making a defi-nitive diagnosis. It is advisable to employ gene mutation testing in preconception genetic screening to reduce the risk of CBAVD and cystic fibrosis in offspring.

摘要

目的

检测先天性双侧输精管缺如(CBAVD)患者的囊性纤维化跨膜传导调节因子(CFTR)基因突变及CBAVD易感基因突变,并探讨其与CBAVD发病风险的相关性。

方法

对13例孤立性CBAVD患者的致病基因CFTR、黏附G蛋白偶联受体G2(ADGRG2)、钠通道上皮1亚基β(SCNN1B)、碳酸酐酶12(CA12)和溶质载体家族9成员A3(SLC9A3)进行全外显子测序及Sanger测序验证。采用聚合酶链反应(PCR)扩增CFTR基因的多态性位点、内含子及侧翼序列,随后进行Sanger测序。运用生物信息学方法对CBAVD中新发现的易感基因突变进行保守性分析和有害性预测。对13例CBAVD患者中的1例患者家系进行遗传分析,评估子代的遗传风险。

结果

外显子测序显示,13例CBAVD患者中仅6例存在CFTR基因外显子突变,包括6个错义突变(c.2684G>A(p.Ser895Asn)、c.4056G>C(p.Gln1352His)、c.2812G>T(p.Val938Leu)、c.3068T>G(p.Ile1023Arg)、c.374T>C(p.Ile125Thr)、c.1666A>G(p.Ile556Val))和1个无义突变(c.1657C>T(p.Arg553Ter))。在这6例患者中,2例还存在CFTR基因p.V470位点纯合突变,另外,其余7例患者未检测到CFTR基因外显子区域突变。13例CBAVD患者中,3例携带p.V470多态性位点纯合突变,4例携带5T等位基因,2例携带TG₁₃等位基因,10例携带c.-966T>G位点。4例CBAVD患者同时携带上述2 - 3个CFTR基因突变位点。13例患者中CBAVD的易感基因突变包括1个ADGRG2错义突变c.2312A>G(p.Asn771Ser)、2个SLC9A3错义突变c.2395T>C(p.Cys799Arg)、c.493G>A(p.Val165Ile)、1个SCNN1B错义突变c.1514G>A(p.Arg505His)和1个CA12错义突变c.1061C>T(p.Ala354Val)。值得注意的是,SLC9A3基因c.493G>A(p.Val165Ile)突变位点首次在CBAVD患者中被发现。这5种突变在gnomAD数据库中的人群突变频率极低,属于罕见突变。Mutation Taster和Polyphen - 2软件预测表明,SLC9A3基因c.493G>A(p.Val165Ile)位点和SCNN1B基因c.1514G>A(p.Arg505His)位点的有害性水平为致病和可能有害。1个家系的遗传分析显示,先证者的c.1657C>T(p.Arg553Ter)突变是新发突变,因其父亲和母亲均未携带该突变。先证者与其配偶通过辅助生殖技术生育了一个女儿,女儿遗传了先证者的致病突变c.1657C>T(p.Arg553Ter)。

结论

CFTR基因突变仍是中国CBAVD患者的主要病因;然而,突变的分布和频率与其他国内外研究报道的数据不同,这凸显了扩大中国CBAVD患者CFTR突变谱的必要性。易感基因ADGRG2、SCNN1B、CA12和SLC9A3可能解释部分无CFTR突变的CBAVD病例。鉴于CBAVD患者缺乏特异性临床表现,建议临床医生进一步进行体格检查,并在明确诊断前考虑阴囊或经直肠超声检查。在孕前遗传筛查中进行CFTR基因突变检测,以降低子代患CBAVD和囊性纤维化的风险。

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