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基于Hirshfeld划分的独立梯度模型评估度普利尤单抗与乙醇的非共价相互作用

Assessing the Noncovalent Interaction of Deucravacitinib and Ethanol with Special Reference to an Independent Gradient Model Based on Hirshfeld Partition.

作者信息

Thomas Jisha Mary, Alzahrani Abdullah Y, Govindarajan Priyadharshini, Thomas Renjith

机构信息

Centre for Theoretical and Computational Chemistry, Department of Chemistry, St Berchmans College (Autonomous), Changanassery, Kerala 686101, India.

Department of Mechanical Engineering, University Centre for Research & Development, Chandigarh University, Gharuan, Mohali, Punjab 140413, India.

出版信息

J Phys Chem B. 2024 Oct 24;128(42):10469-10480. doi: 10.1021/acs.jpcb.4c04852. Epub 2024 Oct 14.

Abstract

The current study begins by optimizing the deucravacitinib molecule in the gas phase at the ωB97XD/cc-pVDZ level of theory using density functional theory and proceeds to study its intramolecular interactions. Further, a molecule of EtOH was introduced at different locations on the deucravacitinib molecule, and the noncovalent interactions arising from them were also investigated using several computational tools. In this way, eight deucravacitinib-EtOH systems () were identified and their electronic environment was studied after evaluating their binding energy. Using natural bond orbital analysis, the localization of charges between the donor and acceptor fragments in these interacting systems was examined. The nature of interactions was analyzed using the reduced gradient approach (NCI analysis), and few hydrogen bonding interactions (intermolecular and intramolecular) were found in each system. The strength of these hydrogen bonding interactions was further investigated by using theoretical tools such as atoms in molecules analysis and independent gradient model based on Hirshfeld partition analysis. The binding energy of deucravacitinib with EtOH was decomposed into energy components based on the domain-based local pair natural orbital coupled cluster technique using LED analysis. The results from the hydrogen bonding interaction analysis using different computational tools were found to be consistent with the calculated order of binding energy of systems and they also pointed toward the higher stability of system .

摘要

当前的研究首先在密度泛函理论的ωB97XD/cc-pVDZ理论水平下,在气相中对度骨化醇替尼分子进行优化,并进而研究其分子内相互作用。此外,在度骨化醇替尼分子的不同位置引入一个乙醇分子,并使用多种计算工具研究由此产生的非共价相互作用。通过这种方式,确定了八个度骨化醇替尼 - 乙醇体系(),并在评估其结合能后研究了它们的电子环境。使用自然键轨道分析,研究了这些相互作用体系中供体和受体片段之间电荷的定位。使用缩减梯度方法(NCI分析)分析了相互作用的性质,并且在每个体系中发现了少量氢键相互作用(分子间和分子内)。通过使用诸如分子中的原子分析和基于赫希菲尔德划分分析的独立梯度模型等理论工具,进一步研究了这些氢键相互作用的强度。基于使用LED分析的基于域的局部对自然轨道耦合簇技术,将度骨化醇替尼与乙醇的结合能分解为能量成分。发现使用不同计算工具进行氢键相互作用分析的结果与体系结合能的计算顺序一致,并且它们还表明体系具有更高的稳定性。

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