Zhao Xiaofeng, Yang Yunhong, Xie Qiuyue, Qiu Jiahan, Sun Xiaofeng
Obstetrics Department, The First Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, Guangzhou, Guangdong, China.
Acupuncture and moxibustion Department, Shanghai University of Traditional Chinese Medicine, Shenzhen Hospital, Shenzhen, Guangdong, China.
Biochem Genet. 2024 Oct 14. doi: 10.1007/s10528-024-10932-0.
In this study, we employed bioinformatics techniques to identify genes associated with apoptosis in recurrent pregnancy loss (RPL). We retrieved the RPL expression profile datasets GSE165004 and GSE73025 from the Gene Expression Omnibus (GEO) database. We also obtained data from the Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway of Apoptosis (hsa04210) to identify apoptosis-related genes. In addition, we performed Friends analysis to explore the interactions between differential apoptosis genes and other genes in the functional pathway. We identified six differentially expressed genes related to apoptosis, including CTSZ, BCL2, PIK3CD, KRAS, GADD45G, and CASP8, with GADD45G as the most gene. Functional fertility analysis revealed that differentially expressed genes primarily regulated protein stability, cell number homeostasis, myeloid cell homeostasis, hematopoietic progenitor cell differentiation, lytic vacuole and lysosome functions, vacuolar and lysosomal membranes, transmembrane transporter binding, protein domain-specific binding, G-protein beta-subunit binding, phospholipid binding, and were involved in pathways such as Rap1 signaling, regulation of actin cytoskeleton, and NOD-like receptor signaling. KRAS exhibited the highest mutation rate in RPL-related cancer CESC. There was also a positive correlation between differentially expressed genes and B cell memory, CD4 memory resting T cells, follicular helper T cells, naïve B cells, and resting dendritic cells. We identified six differentially expressed genes related to apoptosis in RPL, with GADD45G as the most important. NOD-like receptor signaling pathway and regulation of actin cytoskeleton could be therapeutic targets for RPL.
在本研究中,我们运用生物信息学技术来鉴定与复发性流产(RPL)中细胞凋亡相关的基因。我们从基因表达综合数据库(GEO)中检索了RPL表达谱数据集GSE165004和GSE73025。我们还从京都基因与基因组百科全书(KEGG)凋亡通路(hsa04210)获取数据以鉴定凋亡相关基因。此外,我们进行了Friend分析以探究差异凋亡基因与功能通路中其他基因之间的相互作用。我们鉴定出六个与凋亡相关的差异表达基因,包括CTSZ、BCL2、PIK3CD、KRAS、GADD45G和CASP8,其中GADD45G为最重要的基因。功能生育力分析表明,差异表达基因主要调节蛋白质稳定性、细胞数量稳态、髓样细胞稳态、造血祖细胞分化、溶酶体泡和溶酶体功能、液泡和溶酶体膜、跨膜转运蛋白结合、蛋白质结构域特异性结合、G蛋白β亚基结合、磷脂结合,并参与Rap1信号传导、肌动蛋白细胞骨架调节和NOD样受体信号传导等通路。KRAS在RPL相关癌症CESC中表现出最高的突变率。差异表达基因与B细胞记忆、CD4记忆静止T细胞、滤泡辅助性T细胞、未成熟B细胞和静止树突状细胞之间也存在正相关。我们鉴定出RPL中六个与凋亡相关的差异表达基因,其中GADD45G最为重要。NOD样受体信号通路和肌动蛋白细胞骨架调节可能是RPL的治疗靶点。