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全面鉴定向日葵 GASA 基因并分析其对干旱胁迫的表达谱。

Comprehensive identification of GASA genes in sunflower and expression profiling in response to drought.

机构信息

Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, P.O BOX. 54590, Lahore, Pakistan.

Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671, Saudi Arabia.

出版信息

BMC Genomics. 2024 Oct 14;25(1):954. doi: 10.1186/s12864-024-10860-8.

DOI:10.1186/s12864-024-10860-8
PMID:39402437
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11472593/
Abstract

Drought stress poses a critical threat to global crop yields and sustainable agriculture. The GASA genes are recognized for their pivotal role in stress tolerance and plant growth, but little is known about how they function in sunflowers. The investigation aimed to identify and elucidate the role of HaGASA genes in conferring sunflowers with drought tolerance. Twenty-seven different HaGASA gene family members were found in this study that were inconsistently located across eleven sunflower chromosomes. Phylogeny analysis revealed that the sunflower HaGASA genes were divided into five subgroups by comparing GASA genes with those from Arabidopsis, peanut, and soybean, with members within each subgroup displaying similar conserved motifs and gene structures. In-silico evaluation of cis-regulatory elements indicated the existence of specific elements associated with stress-responsiveness being the most abundant, followed by hormone, light, and growth-responsive elements. Transcriptomic data from the NCBI database was utilized to assess the HaGASA genes expression profile in different sunflower varieties under drought conditions. The HaGASA genes expression across ten sunflower genotypes under drought stress, revealed 14 differentially expressed HaGASA genes, implying their active role in the plant's stress response. The expression in different organs revealed that HaGASA2, HaGASA11, HaGASA17, HaGASA19, HaGASA21 and HaGASA26 displayed maximum expression in the stem. Our findings implicate HaGASA genes in mediating sunflower growth maintenance and adaptation to abiotic stress, particularly drought. The findings, taken together, provided a basic understanding of the structure and potential functions of HaGASA genes, setting the framework for further functional investigations into their roles in drought stress mitigation and crop improvement strategies.

摘要

干旱胁迫对全球作物产量和可持续农业构成了严重威胁。GASA 基因因其在胁迫耐受和植物生长中的关键作用而受到关注,但关于它们在向日葵中的功能知之甚少。本研究旨在鉴定和阐明 HaGASA 基因在赋予向日葵耐旱性方面的作用。在本研究中发现了 27 个不同的 HaGASA 基因家族成员,它们在向日葵的 11 条染色体上不均匀分布。系统发育分析表明,通过比较向日葵、花生和大豆的 GASA 基因,将向日葵 HaGASA 基因分为五个亚组,每个亚组内的成员显示出相似的保守基序和基因结构。顺式调控元件的计算机评估表明,存在与应激反应相关的特定元件,其中最丰富的是激素、光和生长反应元件。利用 NCBI 数据库中的转录组数据评估了不同向日葵品种在干旱条件下 HaGASA 基因的表达谱。在十种向日葵基因型中,干旱胁迫下 HaGASA 基因的表达,揭示了 14 个差异表达的 HaGASA 基因,表明它们在植物应激反应中发挥积极作用。不同器官的表达表明,HaGASA2、HaGASA11、HaGASA17、HaGASA19、HaGASA21 和 HaGASA26 在茎中表达最高。我们的研究结果表明,HaGASA 基因在介导向日葵生长维持和适应非生物胁迫,特别是干旱方面发挥作用。总的来说,这些发现为 HaGASA 基因的结构和潜在功能提供了基本了解,为进一步研究它们在缓解干旱胁迫和作物改良策略中的作用奠定了基础。

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