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小开放阅读框,大发现:作为揭示微小蛋白质功能的模型。

Small ORFs, Big Insights: as a Model to Unraveling Microprotein Functions.

机构信息

Unité de Biologie Moléculaire, Cellulaire et du Développement (MCD), UMR 5077, Centre de Biologie Intégrative (CBI), CNRS, UPS, Université de Toulouse, 31062 Toulouse, France.

出版信息

Cells. 2024 Oct 2;13(19):1645. doi: 10.3390/cells13191645.

Abstract

Recently developed experimental and computational approaches to identify putative coding small ORFs (smORFs) in genomes have revealed thousands of smORFs localized within coding and non-coding RNAs. They can be translated into smORF peptides or microproteins, which are defined as less than 100 amino acids in length. The identification of such a large number of potential biological regulators represents a major challenge, notably for elucidating the in vivo functions of these microproteins. Since the emergence of this field, has proved to be a valuable model for studying the biological functions of microproteins in vivo. In this review, we outline how the smORF field emerged and the nomenclature used in this domain. We summarize the technical challenges associated with identifying putative coding smORFs in the genome and the relevant translated microproteins. Finally, recent findings on one of the best studied smORF peptides, Pri, and other microproteins studied so far in are described. These studies highlight the diverse roles that microproteins can fulfil in the regulation of various molecular targets involved in distinct cellular processes during animal development and physiology. Given the recent emergence of the microprotein field and the associated discoveries, the microproteome represents an exquisite source of potentially bioactive molecules, whose in vivo biological functions can be explored in the model.

摘要

最近开发的用于在基因组中识别推定编码小开放阅读框 (smORF) 的实验和计算方法揭示了数千个位于编码和非编码 RNA 内的 smORF。它们可以翻译成 smORF 肽或微蛋白,其长度定义为小于 100 个氨基酸。鉴定如此大量的潜在生物调节剂代表了一个主要挑战,特别是对于阐明这些微蛋白的体内功能而言。自该领域出现以来,已被证明是研究体内微蛋白生物功能的有价值模型。在这篇综述中,我们概述了 smORF 领域的出现以及该领域使用的命名法。我们总结了在基因组中识别推定编码 smORF 和相关翻译微蛋白所涉及的技术挑战。最后,描述了迄今为止在 中研究的最具研究价值的 smORF 肽之一 Pri 和其他微蛋白的最新发现。这些研究强调了微蛋白在动物发育和生理过程中涉及不同细胞过程的各种分子靶标调节中可以发挥的不同作用。鉴于微蛋白领域的最新出现及其相关发现,微蛋白组代表了潜在生物活性分子的绝佳来源,其体内生物学功能可以在 模型中进行探索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d050/11475943/49d51491f194/cells-13-01645-g001.jpg

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