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INO80 调节染色质可及性,以促进小鼠精子发生过程中性连锁基因表达的抑制。

INO80 regulates chromatin accessibility to facilitate suppression of sex-linked gene expression during mouse spermatogenesis.

机构信息

Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

出版信息

PLoS Genet. 2024 Oct 15;20(10):e1011431. doi: 10.1371/journal.pgen.1011431. eCollection 2024 Oct.

DOI:10.1371/journal.pgen.1011431
PMID:39405305
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11508167/
Abstract

The INO80 protein is the main catalytic subunit of the INO80-chromatin remodeling complex, which is critical for DNA repair and transcription regulation in murine spermatocytes. In this study, we explored the role of INO80 in silencing genes on meiotic sex chromosomes in male mice. INO80 immunolocalization at the XY body in pachytene spermatocytes suggested a role for INO80 in the meiotic sex body. Subsequent deletion of Ino80 resulted in high expression of sex-linked genes. Furthermore, the active form of RNA polymerase II at the sex chromosomes of Ino80-null pachytene spermatocytes indicates incomplete inactivation of sex-linked genes. A reduction in the recruitment of initiators of meiotic sex chromosome inhibition (MSCI) argues for INO80-facilitated recruitment of DNA repair factors required for silencing sex-linked genes. This role of INO80 is independent of a common INO80 target, H2A.Z. Instead, in the absence of INO80, a reduction in chromatin accessibility at DNA repair sites occurs on the sex chromosomes. These data suggest a role for INO80 in DNA repair factor localization, thereby facilitating the silencing of sex-linked genes during the onset of pachynema.

摘要

INO80 蛋白是 INO80-染色质重塑复合物的主要催化亚基,该复合物对于小鼠精母细胞中的 DNA 修复和转录调控至关重要。在这项研究中,我们探索了 INO80 在雄性小鼠减数分裂性染色体基因沉默中的作用。在粗线期精母细胞的 XY 体中,INO80 的免疫定位表明 INO80 参与了减数分裂性体的形成。随后,Ino80 的缺失导致了性连锁基因的高表达。此外,在 Ino80 缺失的粗线期精母细胞的性染色体上,RNA 聚合酶 II 的活性形式表明性连锁基因的不完全失活。减数分裂性染色体抑制(MSCI)起始因子的募集减少表明 INO80 有助于募集沉默性连锁基因所需的 DNA 修复因子。INO80 的这种作用不依赖于常见的 INO80 靶标 H2A.Z。相反,在没有 INO80 的情况下,性染色体上的 DNA 修复位点的染色质可及性降低。这些数据表明 INO80 在 DNA 修复因子定位中的作用,从而在粗线期开始时促进了性连锁基因的沉默。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/06a44dc5479a/pgen.1011431.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/fce4b824c5ce/pgen.1011431.g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/346478eb179d/pgen.1011431.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/ebbfc7010248/pgen.1011431.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/f27a525a4aa5/pgen.1011431.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/62c20580c5c7/pgen.1011431.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/06a44dc5479a/pgen.1011431.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/fce4b824c5ce/pgen.1011431.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/0b72927bdde9/pgen.1011431.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/1e612fa32288/pgen.1011431.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/346478eb179d/pgen.1011431.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/ebbfc7010248/pgen.1011431.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/f27a525a4aa5/pgen.1011431.g006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33c6/11508167/06a44dc5479a/pgen.1011431.g008.jpg

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本文引用的文献

1
Efficient Enrichment of Synchronized Mouse Spermatocytes Suitable for Genome-Wide Analysis.高效富集同步化的小鼠精母细胞,适用于全基因组分析。
Methods Mol Biol. 2024;2818:65-80. doi: 10.1007/978-1-0716-3906-1_4.
2
INO80-Dependent Remodeling of Transcriptional Regulatory Network Underlies the Progression of Heart Failure.INO80 依赖性转录调控网络重构导致心力衰竭的进展。
Circulation. 2024 Apr 2;149(14):1121-1138. doi: 10.1161/CIRCULATIONAHA.123.065440. Epub 2023 Dec 28.
3
Context-specific functions of chromatin remodellers in development and disease.
染色质重塑因子在发育和疾病中的特定功能。
Nat Rev Genet. 2024 May;25(5):340-361. doi: 10.1038/s41576-023-00666-x. Epub 2023 Nov 24.
4
Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.六聚体-INO80 复合物揭示了非典型核小体重塑的结构基础。
Science. 2023 Jul 21;381(6655):313-319. doi: 10.1126/science.adf6287. Epub 2023 Jun 29.
5
Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility.INO80 六聚体上的重新取向揭示了其机制多功能性的基础。
Science. 2023 Jul 21;381(6655):319-324. doi: 10.1126/science.adf4197. Epub 2023 Jun 29.
6
Modeling mammalian spermatogonial differentiation and meiotic initiation in vitro.体外模拟哺乳动物精原细胞分化和减数分裂起始。
Development. 2022 Nov 15;149(22). doi: 10.1242/dev.200713. Epub 2022 Nov 16.
7
ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes.ChromoMap:一个用于多组学数据交互式可视化和染色体注释的 R 包。
BMC Bioinformatics. 2022 Jan 11;23(1):33. doi: 10.1186/s12859-021-04556-z.
8
INO80 requires a polycomb subunit to regulate the establishment of poised chromatin in murine spermatocytes.INO80 需要一个 polycomb 亚基来调节小鼠精母细胞中染色质的建立。
Development. 2022 Jan 1;149(1). doi: 10.1242/dev.200089. Epub 2022 Jan 10.
9
INO80 promotes H2A.Z occupancy to regulate cell fate transition in pluripotent stem cells.INO80促进H2A.Z占据,以调控多能干细胞中的细胞命运转变。
Nucleic Acids Res. 2021 Jul 9;49(12):6739-6755. doi: 10.1093/nar/gkab476.
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Twelve years of SAMtools and BCFtools.SAMtools 和 BCFtools 十二年。
Gigascience. 2021 Feb 16;10(2). doi: 10.1093/gigascience/giab008.