Suppr超能文献

预功臂肌球蛋白的动力学和 Omecamtiv Mecarbil 的影响。

Dynamics of the Pre-Powerstroke Myosin Lever Arm and the Effects of Omecamtiv Mecarbil.

机构信息

Department of Bioengineering, University of Washington, Seattle, WA 98195, USA.

出版信息

Int J Mol Sci. 2024 Sep 27;25(19):10425. doi: 10.3390/ijms251910425.

Abstract

The binding of small molecules to sarcomeric myosin can elicit powerful effects on the chemomechanical cycle, making them effective therapeutics in the clinic and research tools at the benchtop. However, these myotropes can have complex effects that act on different phases of the crossbridge cycle and which depend on structural, dynamic, and environmental variables. While small molecule binding sites have been identified crystallographically and their effects on contraction studied extensively, small molecule-induced dynamic changes that link structure-function are less studied. Here, we use molecular dynamics simulations to explore how omecamtiv mecarbil (OM), a cardiac myosin-specific myotrope, alters the coordinated dynamics of the lever arm and the motor domain in the pre-powerstroke state. We show that the lever arm adopts a range of orientations and find that different lever arm orientations are accompanied by changes in the hydrogen bonding patterns near the converter. We find that the binding of OM to myosin reduces the conformational heterogeneity of the lever arm orientation and also adjusts the average lever arm orientation. Finally, we map out the distinct conformations and ligand-protein interactions adopted by OM. These results uncover some structural factors that govern the motor domain-tail orientations and the mechanisms by which OM primes the pre-powerstroke myosin heads.

摘要

小分子与肌球蛋白的结合可以对化学机械循环产生强大的影响,使其成为临床上有效的治疗药物和台式研究工具。然而,这些肌动蛋白调节剂可能具有复杂的作用,作用于交联循环的不同阶段,并且取决于结构、动态和环境变量。虽然已经通过晶体学确定了小分子结合位点,并广泛研究了它们对收缩的影响,但与结构功能相关的小分子诱导的动态变化研究较少。在这里,我们使用分子动力学模拟来探讨肌球蛋白特异性肌动蛋白调节剂奥马曲美(OM)如何改变预功状态下的杠杆臂和马达域的协调动力学。我们表明,杠杆臂采用了一系列取向,并且发现不同的杠杆臂取向伴随着转换器附近氢键模式的变化。我们发现,OM 与肌球蛋白的结合降低了杠杆臂取向的构象异质性,并调整了平均杠杆臂取向。最后,我们绘制了 OM 采用的不同构象和配体-蛋白相互作用。这些结果揭示了一些结构因素,这些因素控制着马达域-尾部的取向以及 OM 使预功状态下的肌球蛋白头部准备好的机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5588/11477208/3b1c31d0301c/ijms-25-10425-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验