Department of Biophysics and Radiation Biology, Semmelweis University, Tűzoltó u. 37-47, 1094 Budapest, Hungary.
Department of Medical Chemistry, University of Szeged, Dóm tér 8, 6720 Szeged, Hungary.
Int J Mol Sci. 2024 Sep 28;25(19):10460. doi: 10.3390/ijms251910460.
β-amyloid (Aβ) peptides form self-organizing fibrils in Alzheimer's disease. The biologically active, toxic Aβ25-35 fragment of the full-length Aβ-peptide forms a stable, oriented filament network on the mica surface with an epitaxial mechanism at the timescale of seconds. While many of the structural and dynamic features of the oriented Aβ25-35 fibrils have been investigated before, the β-strand arrangement of the fibrils and their exact orientation with respect to the mica lattice remained unknown. By using high-resolution atomic force microscopy, here, we show that the Aβ25-35 fibrils are oriented along the long diagonal of the oxygen hexagon of mica. To test the structure and stability of the oriented fibrils further, we carried out molecular dynamics simulations on model β-sheets. The models included the mica surface and a single fibril motif built from β-strands. We show that a sheet with parallel β-strands binds to the mica surface with its positively charged groups, but the C-terminals of the strands orient upward. In contrast, the model with antiparallel strands preserves its parallel orientation with the surface in the molecular dynamics simulation, suggesting that this model describes the first β-sheet layer of the mica-bound Aβ25-35 fibrils well. These results pave the way toward nanotechnological construction and applications for the designed amyloid peptides.
β-淀粉样蛋白(Aβ)肽在阿尔茨海默病中形成自组织纤维。全长 Aβ 肽的生物活性、有毒 Aβ25-35 片段以秒为时间尺度,通过外延机制在云母表面上形成稳定的、定向的丝状网络。虽然以前已经研究了定向 Aβ25-35 纤维的许多结构和动态特征,但纤维的 β-链排列及其相对于云母晶格的确切取向仍然未知。通过使用高分辨率原子力显微镜,我们在这里表明,Aβ25-35 纤维沿云母的氧六边形的长对角线定向。为了进一步测试定向纤维的结构和稳定性,我们对模型β-片层进行了分子动力学模拟。模型包括云母表面和由 β-链构成的单个纤维图案。我们表明,具有平行 β-链的片层通过其带正电荷的基团与云母表面结合,但链的 C 末端向上定向。相比之下,具有反平行链的模型在分子动力学模拟中保留了其与表面的平行取向,这表明该模型很好地描述了云母结合的 Aβ25-35 纤维的第一层β-片层。这些结果为设计的淀粉样肽的纳米技术构建和应用铺平了道路。