玉米籽粒品质相关性状的全基因组关联研究及元QTL分析
GWAS and Meta-QTL Analysis of Kernel Quality-Related Traits in Maize.
作者信息
Tang Rui, Zhuang Zelong, Bian Jianwen, Ren Zhenping, Ta Wanling, Peng Yunling
机构信息
College of Agronomy, Gansu Agricultural University, Lanzhou 730070, China.
Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Agricultural University, Lanzhou 730070, China.
出版信息
Plants (Basel). 2024 Sep 29;13(19):2730. doi: 10.3390/plants13192730.
The quality of corn kernels is crucial for their nutritional value, making the enhancement of kernel quality a primary objective of contemporary corn breeding efforts. This study utilized 260 corn inbred lines as research materials and assessed three traits associated with grain quality. A genome-wide association study (GWAS) was conducted using the best linear unbiased estimator (BLUE) for quality traits, resulting in the identification of 23 significant single nucleotide polymorphisms (SNPs). Additionally, nine genes associated with grain quality traits were identified through gene function annotation and prediction. Furthermore, a total of 697 quantitative trait loci (QTL) related to quality traits were compiled from 27 documents, followed by a meta-QTL analysis that revealed 40 meta-QTL associated with these traits. Among these, 19 functional genes and reported candidate genes related to quality traits were detected. Three significant SNPs identified by GWAS were located within the intervals of these QTL, while the remaining eight significant SNPs were situated within 2 Mb of the QTL. In summary, the findings of this study provide a theoretical framework for analyzing the genetic basis of corn grain quality-related traits and for enhancing corn quality.
玉米粒的品质对其营养价值至关重要,因此提高籽粒品质是当代玉米育种工作的主要目标。本研究以260个玉米自交系为研究材料,评估了与籽粒品质相关的三个性状。利用品质性状的最佳线性无偏估计值(BLUE)进行全基因组关联研究(GWAS),鉴定出23个显著的单核苷酸多态性(SNP)。此外,通过基因功能注释和预测,鉴定出9个与籽粒品质性状相关的基因。此外,从27篇文献中整理出697个与品质性状相关的数量性状位点(QTL),随后进行的元QTL分析揭示了40个与这些性状相关的元QTL。其中,检测到19个与品质性状相关的功能基因和已报道的候选基因。GWAS鉴定出的三个显著SNP位于这些QTL区间内,其余八个显著SNP位于QTL的2 Mb范围内。总之,本研究结果为分析玉米籽粒品质相关性状的遗传基础和提高玉米品质提供了理论框架。